MGE detailed information
MGE type: Prophage MGE length: 19087 bp
Accession: NZ_CP011322 Location: 1626108..1645194 Organism: Escherichia coli strain SQ110 Replicon: chromosome
Accession: NZ_CP011322 Location: 1626108..1645194 Organism: Escherichia coli strain SQ110 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG46_RS07855 () | 1621701..1621904 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SG46_RS07860 () | 1621939..1623399 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SG46_RS07865 () | 1623488..1624855 | - | 1368 | Protein_1541 | MHS family MFS transporter | - |
| SG46_RS07870 () | 1625376..1625489 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SG46_RS07875 () | 1625558..1625791 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| SG46_RS07880 () | 1626108..1626698 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SG46_RS07885 () | 1626796..1627371 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SG46_RS07890 () | 1627371..1628333 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SG46_RS07895 () | 1628284..1628853 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SG46_RS07900 () | 1629242..1629475 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SG46_RS07905 () | 1629533..1629943 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SG46_RS07910 () | 1630095..1630268 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SG46_RS07915 () | 1630440..1630595 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SG46_RS07920 () | 1630674..1630739 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SG46_RS07925 () | 1630742..1630930 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SG46_RS07930 () | 1630941..1631153 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SG46_RS07935 () | 1631516..1632013 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SG46_RS07940 () | 1632010..1632543 | - | 534 | WP_001092971.1 | lysozyme | - |
| SG46_RS07945 () | 1632540..1632851 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SG46_RS07950 () | 1632856..1633071 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SG46_RS07955 () | 1633825..1634040 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SG46_RS07960 () | 1634341..1634553 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SG46_RS07965 () | 1634608..1634697 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SG46_RS07970 () | 1634975..1635727 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SG46_RS07975 () | 1635741..1636790 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| SG46_RS07980 () | 1636792..1637070 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SG46_RS07985 () | 1637137..1637388 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SG46_RS07990 () | 1637605..1637760 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SG46_RS07995 () | 1637832..1638119 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SG46_RS08000 () | 1638119..1638358 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SG46_RS08005 () | 1638383..1638688 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SG46_RS08010 () | 1638891..1639223 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SG46_RS08015 () | 1639660..1639809 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SG46_RS08020 () | 1639844..1640122 | - | 279 | Protein_1572 | hypothetical protein | - |
| SG46_RS08025 () | 1640106..1640336 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SG46_RS08030 () | 1640420..1640827 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SG46_RS08035 () | 1640994..1641149 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SG46_RS08040 () | 1641309..1641527 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SG46_RS08045 () | 1642095..1642283 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SG46_RS08050 () | 1642280..1642471 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| SG46_RS08055 () | 1642564..1643331 | + | 768 | Protein_1579 | exonuclease | - |
| SG46_RS08060 () | 1643328..1644023 | + | 696 | Protein_1580 | IS3 family transposase IS2 | Transposase |
| SG46_RS08065 () | 1644037..1645194 | + | 1158 | Protein_1581 | Putative defective protein IntQ ; Integrase | Integrase |
| SG46_RS08070 () | 1645214..1645324 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SG46_RS08075 () | 1645382..1646401 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SG46_RS08080 () | 1646413..1647627 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SG46_RS08085 () | 1647833..1648159 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SG46_RS08090 () | 1648294..1648635 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SG46_RS08095 () | 1648670..1649230 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SG46_RS08100 () | 1649233..1649943 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.003 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.003 |