MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP011320 Location: 2753399..2795284 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Accession: NZ_CP011320 Location: 2753399..2795284 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG48_RS13645 () | 2749035..2750696 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| SG48_RS13650 () | 2750845..2751186 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| SG48_RS13655 () | 2751248..2751538 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| SG48_RS13660 () | 2751528..2751965 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| SG48_RS13665 () | 2752136..2752618 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| SG48_RS13670 () | 2753399..2754640 | + | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| SG48_RS13675 () | 2754884..2755840 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| SG48_RS13680 () | 2755884..2756096 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| SG48_RS13685 () | 2756225..2757634 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| SG48_RS13690 () | 2757787..2758413 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| SG48_RS13695 () | 2758591..2760780 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| SG48_RS13700 () | 2760777..2762393 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| SG48_RS13705 () | 2762753..2763016 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| SG48_RS13710 () | 2763158..2764231 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| SG48_RS13715 () | 2764224..2764595 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| SG48_RS13720 () | 2764950..2765813 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| SG48_RS13725 () | 2765905..2766726 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| SG48_RS13730 () | 2766943..2767644 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| SG48_RS13735 () | 2767685..2767921 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| SG48_RS13740 () | 2767921..2768364 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| SG48_RS13745 () | 2768388..2768855 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| SG48_RS13750 () | 2769080..2769394 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| SG48_RS13755 () | 2769407..2770416 | - | 1010 | Protein_2633 | arsenic transporter | - |
| SG48_RS13760 () | 2770558..2772261 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| SG48_RS24145 () | 2772833..2773056 | + | 224 | Protein_2635 | DUF905 family protein | - |
| SG48_RS13765 () | 2773159..2773617 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| SG48_RS13770 () | 2773626..2774108 | + | 483 | WP_001407480.1 | RadC family protein | - |
| SG48_RS24150 () | 2774117..2774317 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| SG48_RS13775 () | 2774355..2774672 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| SG48_RS13780 () | 2774693..2775022 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| SG48_RS23080 () | 2775386..2779966 | - | 4581 | WP_010723187.1 | putative autotransporter | VF |
| SG48_RS24155 () | 2780031..2780150 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| SG48_RS24165 () | 2780305..2780523 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| SG48_RS25650 () | 2780878..2782251 | - | 1374 | Protein_2644 | DUF5507 domain-containing protein | - |
| SG48_RS25950 () | 2783637..2785889 | + | 2253 | Protein_2645 | hypothetical protein | - |
| SG48_RS13835 () | 2786225..2787202 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| SG48_RS13840 () | 2787222..2788490 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| SG48_RS13845 () | 2788513..2789961 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| SG48_RS13850 () | 2789975..2791255 | + | 1281 | WP_001087611.1 | 4-aminobutyrate aminotransferase GabT | VF |
| SG48_RS13855 () | 2791493..2792893 | + | 1401 | WP_001295173.1 | GABA permease | - |
| SG48_RS13860 () | 2792914..2793576 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| SG48_RS13865 () | 2793577..2794026 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| SG48_RS13870 () | 2794110..2794268 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| SG48_RS13875 () | 2794451..2794750 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SG48_RS13880 () | 2794760..2795284 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| SG48_RS13885 () | 2795331..2795735 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| SG48_RS13890 () | 2796404..2796853 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| SG48_RS13895 () | 2796890..2797234 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| SG48_RS13900 () | 2797386..2797715 | + | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| SG48_RS13905 () | 2797963..2798208 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| SG48_RS13910 () | 2798205..2798615 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.007 |