MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP011320 Location: 1629027..1650733 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Accession: NZ_CP011320 Location: 1629027..1650733 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG48_RS08055 () | 1625542..1626288 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SG48_RS08060 () | 1626377..1627063 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SG48_RS08065 () | 1627240..1627443 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SG48_RS08070 () | 1627478..1628938 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SG48_RS08075 () | 1629027..1630394 | - | 1368 | Protein_1541 | MHS family MFS transporter | - |
| SG48_RS25560 () | 1630915..1631028 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SG48_RS08080 () | 1631097..1631330 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| SG48_RS08085 () | 1631647..1632237 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SG48_RS08090 () | 1632335..1632910 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SG48_RS08095 () | 1632910..1633872 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SG48_RS08100 () | 1633823..1634392 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SG48_RS08105 () | 1634781..1635014 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SG48_RS08110 () | 1635072..1635482 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SG48_RS08115 () | 1635634..1635807 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SG48_RS08120 () | 1635979..1636134 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SG48_RS25565 () | 1636213..1636278 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SG48_RS23785 () | 1636281..1636469 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SG48_RS08125 () | 1636480..1636692 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SG48_RS08130 () | 1637055..1637552 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SG48_RS08135 () | 1637549..1638082 | - | 534 | WP_001092971.1 | lysozyme | - |
| SG48_RS08140 () | 1638079..1638390 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SG48_RS08145 () | 1638395..1638610 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SG48_RS08150 () | 1639364..1639579 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SG48_RS08155 () | 1639880..1640092 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SG48_RS25570 () | 1640147..1640236 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SG48_RS08160 () | 1640514..1641266 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SG48_RS08165 () | 1641280..1642329 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| SG48_RS08170 () | 1642331..1642609 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SG48_RS08175 () | 1642676..1642927 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SG48_RS08180 () | 1643144..1643299 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SG48_RS08185 () | 1643371..1643658 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SG48_RS08190 () | 1643658..1643897 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SG48_RS23790 () | 1643922..1644227 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SG48_RS08195 () | 1644430..1644762 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SG48_RS23055 () | 1645199..1645348 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SG48_RS08200 () | 1645383..1645661 | - | 279 | Protein_1572 | hypothetical protein | - |
| SG48_RS08205 () | 1645645..1645875 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SG48_RS08210 () | 1645959..1646366 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SG48_RS08215 () | 1646533..1646688 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SG48_RS08220 () | 1646848..1647066 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SG48_RS08230 () | 1647634..1647822 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SG48_RS08235 () | 1647819..1648010 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| SG48_RS23805 () | 1648103..1648870 | + | 768 | Protein_1579 | exonuclease | - |
| SG48_RS08245 () | 1648867..1649562 | + | 696 | Protein_1580 | IS3 family transposase IS2 | Transposase |
| SG48_RS25580 () | 1649576..1650733 | + | 1158 | Protein_1581 | Putative defective protein IntQ ; Integrase | Integrase |
| SG48_RS25070 () | 1650753..1650863 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SG48_RS08255 () | 1650921..1651940 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SG48_RS08260 () | 1651952..1653166 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SG48_RS08265 () | 1653372..1653698 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SG48_RS08270 () | 1653833..1654174 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SG48_RS08275 () | 1654209..1654769 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SG48_RS08280 () | 1654772..1655482 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |