MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP011113 Location: 2713006..2754891 Organism: Escherichia coli strain RR1 Replicon: chromosome
Accession: NZ_CP011113 Location: 2713006..2754891 Organism: Escherichia coli strain RR1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SR35_RS14380 () | 2708642..2710303 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| SR35_RS14385 () | 2710452..2710793 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| SR35_RS14390 () | 2710855..2711145 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| SR35_RS14395 () | 2711135..2711572 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| SR35_RS14400 () | 2711743..2712225 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| SR35_RS14410 () | 2713006..2714247 | + | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| SR35_RS14415 () | 2714491..2715447 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| SR35_RS14420 () | 2715491..2715703 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| SR35_RS14425 () | 2715832..2717241 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| SR35_RS14430 () | 2717394..2718020 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| SR35_RS14435 () | 2718198..2720387 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| SR35_RS14440 () | 2720384..2722000 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| SR35_RS14445 () | 2722360..2722623 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| SR35_RS14450 () | 2722765..2723838 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| SR35_RS14455 () | 2723831..2724202 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| SR35_RS14460 () | 2724557..2725420 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| SR35_RS14465 () | 2725512..2726333 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| SR35_RS14470 () | 2726550..2727251 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| SR35_RS14475 () | 2727292..2727528 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| SR35_RS14480 () | 2727528..2727971 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| SR35_RS14485 () | 2727995..2728462 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| SR35_RS14490 () | 2728687..2729001 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| SR35_RS14495 () | 2729014..2730023 | - | 1010 | Protein_2593 | arsenic transporter | - |
| SR35_RS14500 () | 2730165..2731868 | + | 1704 | WP_001698958.1 | hypothetical protein | - |
| SR35_RS14505 () | 2732440..2732663 | + | 224 | Protein_2595 | DUF905 family protein | - |
| SR35_RS14510 () | 2732766..2733224 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| SR35_RS14515 () | 2733233..2733715 | + | 483 | WP_001407480.1 | RadC family protein | - |
| SR35_RS14520 () | 2733724..2733924 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| SR35_RS14525 () | 2733962..2734279 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| SR35_RS14530 () | 2734300..2734629 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| SR35_RS14535 () | 2734993..2739573 | - | 4581 | WP_010723187.1 | hypothetical protein | VF |
| SR35_RS14540 () | 2739638..2739757 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| SR35_RS14550 () | 2739912..2740130 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| SR35_RS24940 () | 2740485..2741858 | - | 1374 | Protein_2604 | DUF5507 domain-containing protein | - |
| SR35_RS25185 () | 2743244..2745496 | + | 2253 | Protein_2605 | hypothetical protein | - |
| SR35_RS14590 () | 2745832..2746809 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| SR35_RS14595 () | 2746829..2748097 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| SR35_RS14600 () | 2748120..2749568 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| SR35_RS14605 () | 2749582..2750862 | + | 1281 | WP_001087611.1 | Acetylornithine/succinyldiaminopimelate aminotransferase | VF |
| SR35_RS14610 () | 2751100..2752500 | + | 1401 | WP_001295173.1 | GABA permease | - |
| SR35_RS14615 () | 2752521..2753183 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| SR35_RS14620 () | 2753184..2753633 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| SR35_RS14625 () | 2753717..2753875 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| SR35_RS14630 () | 2754058..2754357 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SR35_RS14635 () | 2754367..2754891 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| SR35_RS14640 () | 2754938..2755342 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| SR35_RS14645 () | 2756011..2756460 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| SR35_RS14650 () | 2756497..2756841 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| SR35_RS14655 () | 2756993..2757322 | + | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| SR35_RS14660 () | 2757570..2757815 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| SR35_RS14665 () | 2757812..2758222 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.008 |