MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP010445 Location: 2427370..2449076 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010445 Location: 2427370..2449076 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF31_RS11985 () | 2423885..2424631 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SF31_RS11990 () | 2424720..2425406 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SF31_RS11995 () | 2425583..2425786 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SF31_RS12000 () | 2425821..2427281 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SF31_RS12005 () | 2427370..2428737 | - | 1368 | Protein_2254 | MHS family MFS transporter | - |
| SF31_RS26000 () | 2429258..2429371 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SF31_RS12010 () | 2429440..2429673 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| SF31_RS12015 () | 2429990..2430580 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SF31_RS12020 () | 2430678..2431253 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SF31_RS12025 () | 2431253..2432215 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SF31_RS12030 () | 2432166..2432735 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SF31_RS12035 () | 2433124..2433357 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SF31_RS12040 () | 2433415..2433825 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SF31_RS12045 () | 2433977..2434150 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SF31_RS12050 () | 2434322..2434477 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SF31_RS26005 () | 2434556..2434621 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SF31_RS24415 () | 2434624..2434812 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SF31_RS12055 () | 2434823..2435035 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SF31_RS12060 () | 2435398..2435895 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SF31_RS12065 () | 2435892..2436425 | - | 534 | WP_001092971.1 | lysozyme | - |
| SF31_RS12070 () | 2436422..2436733 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SF31_RS12075 () | 2436738..2436953 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SF31_RS12080 () | 2437707..2437922 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SF31_RS12085 () | 2438223..2438435 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SF31_RS26010 () | 2438490..2438579 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SF31_RS12090 () | 2438857..2439609 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SF31_RS12095 () | 2439623..2440672 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SF31_RS12100 () | 2440674..2440952 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SF31_RS12105 () | 2441019..2441270 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SF31_RS12110 () | 2441487..2441642 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SF31_RS12115 () | 2441714..2442001 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SF31_RS12120 () | 2442001..2442240 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SF31_RS24420 () | 2442265..2442570 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SF31_RS12125 () | 2442773..2443105 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SF31_RS23345 () | 2443542..2443691 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SF31_RS12130 () | 2443726..2444004 | - | 279 | Protein_2285 | hypothetical protein | - |
| SF31_RS12135 () | 2443988..2444218 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SF31_RS12140 () | 2444302..2444709 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SF31_RS12145 () | 2444876..2445031 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SF31_RS12150 () | 2445191..2445409 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SF31_RS12160 () | 2445977..2446165 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SF31_RS12165 () | 2446162..2446353 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| SF31_RS24435 () | 2446446..2447213 | + | 768 | Protein_2292 | exonuclease | - |
| SF31_RS12175 () | 2447210..2447905 | + | 696 | Protein_2293 | IS3 family transposase IS2 | Transposase |
| SF31_RS26020 () | 2447919..2449076 | + | 1158 | Protein_2294 | Putative defective protein IntQ ; Integrase | Integrase |
| SF31_RS25485 () | 2449096..2449206 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SF31_RS12185 () | 2449264..2450283 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SF31_RS12190 () | 2450295..2451509 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SF31_RS12195 () | 2451715..2452041 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SF31_RS12200 () | 2452176..2452517 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SF31_RS12205 () | 2452552..2453112 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SF31_RS12210 () | 2453115..2453825 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |