MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP010445 Location: 2208368..2230042 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010445 Location: 2208368..2230042 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF31_RS10960 () | 2204418..2205401 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| SF31_RS10970 () | 2205879..2207252 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| SF31_RS10975 () | 2207381..2208316 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| SF31_RS24305 () | 2208368..2209603 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| SF31_RS10985 () | 2209605..2209820 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| SF31_RS10990 () | 2209899..2210108 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2209924..2210102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209924..2210102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209924..2210102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209924..2210102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| SF31_RS10995 () | 2210101..2210295 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| SF31_RS11000 () | 2210352..2211161 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| SF31_RS11005 () | 2211154..2213754 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| SF31_RS11010 () | 2213856..2214131 | - | 276 | WP_000632297.1 | protein RacC | - |
| SF31_RS11015 () | 2214206..2214376 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| SF31_RS11020 () | 2214376..2214597 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| SF31_RS11025 () | 2215039..2215527 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| SF31_RS23250 () | 2215524..2215679 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| SF31_RS11030 () | 2216133..2216609 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| SF31_RS11035 () | 2216733..2217029 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| SF31_RS11040 () | 2217052..2217474 | + | 423 | WP_000693797.1 | phage protein | - |
| SF31_RS11045 () | 2217487..2218344 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| SF31_RS11050 () | 2218351..2219097 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| SF31_RS11055 () | 2219120..2219572 | + | 453 | Protein_2070 | DUF1627 domain-containing protein | - |
| SF31_RS25435 () | 2219768..2219953 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| SF31_RS11065 () | 2220150..2221607 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| SF31_RS11070 () | 2221745..2222008 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| SF31_RS11075 () | 2221989..2222348 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| SF31_RS11085 () | 2222822..2223754 | + | 933 | Protein_2075 | phage tail length tape measure family protein | - |
| SF31_RS11090 () | 2223757..2223972 | + | 216 | Protein_2076 | Ail/Lom family outer membrane beta-barrel protein | - |
| SF31_RS11095 () | 2224114..2225094 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| SF31_RS25440 () | 2225164..2225352 | + | 189 | Protein_2078 | Ail/Lom family outer membrane beta-barrel protein | - |
| SF31_RS24330 () | 2225417..2228779 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SF31_RS11120 () | 2228779..2229354 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| SF31_RS11125 () | 2229452..2230042 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SF31_RS11130 () | 2230359..2230592 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SF31_RS25965 () | 2230661..2230774 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| SF31_RS11135 () | 2231553..2231987 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| SF31_RS11140 () | 2232128..2233261 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |