MGE detailed information
MGE type: Prophage MGE length: 22914 bp
Accession: NZ_CP010444 Location: 2376569..2399482 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010444 Location: 2376569..2399482 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH07_RS11670 () | 2373084..2373830 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH07_RS11675 () | 2373919..2374605 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH07_RS11680 () | 2374782..2374985 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH07_RS11685 () | 2375020..2376480 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH07_RS11690 () | 2376569..2377936 | - | 1368 | Protein_2196 | MHS family MFS transporter | - |
| SH07_RS25570 () | 2378457..2378570 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH07_RS11695 () | 2378639..2378872 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH07_RS11700 () | 2379189..2379779 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH07_RS11705 () | 2379877..2380452 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH07_RS11710 () | 2380452..2381414 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH07_RS11715 () | 2381365..2381934 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH07_RS11720 () | 2382323..2382556 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH07_RS11725 () | 2382614..2383024 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH07_RS11730 () | 2383176..2383349 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH07_RS11735 () | 2383521..2383676 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH07_RS25575 () | 2383755..2383820 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH07_RS24000 () | 2383823..2384011 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH07_RS11740 () | 2384022..2384234 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH07_RS11745 () | 2384597..2385094 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH07_RS11750 () | 2385091..2385624 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH07_RS11755 () | 2385621..2385932 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH07_RS11760 () | 2385937..2386152 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH07_RS11765 () | 2386906..2387121 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH07_RS11770 () | 2387422..2387634 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH07_RS25580 () | 2387689..2387778 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH07_RS11775 () | 2388056..2388808 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH07_RS11780 () | 2388822..2389871 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH07_RS11785 () | 2389873..2390151 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH07_RS11790 () | 2390218..2390469 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH07_RS11795 () | 2390686..2390841 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH07_RS11800 () | 2390913..2391200 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH07_RS11805 () | 2391200..2391439 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH07_RS24005 () | 2391464..2391769 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH07_RS11810 () | 2391972..2392304 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH07_RS22975 () | 2392741..2392890 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH07_RS11815 () | 2392925..2393203 | - | 279 | Protein_2227 | hypothetical protein | - |
| SH07_RS11820 () | 2393187..2393417 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH07_RS11825 () | 2393501..2393908 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH07_RS11830 () | 2394075..2394230 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH07_RS11835 () | 2394390..2394608 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH07_RS11845 () | 2395176..2395364 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH07_RS11850 () | 2395361..2395552 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH07_RS24020 () | 2395645..2396412 | + | 768 | Protein_2234 | exonuclease | - |
| SH07_RS11860 () | 2396409..2397104 | + | 696 | Protein_2235 | IS3 family transposase IS2 | Transposase |
| SH07_RS25590 () | 2397118..2398275 | + | 1158 | Protein_2236 | Tyrosine recombinase XerD ; Integrase | Integrase |
| SH07_RS25070 () | 2398295..2398405 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH07_RS11870 () | 2398463..2399482 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH07_RS11875 () | 2399494..2400708 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH07_RS11880 () | 2400914..2401240 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH07_RS11885 () | 2401375..2401716 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH07_RS11890 () | 2401751..2402311 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH07_RS11895 () | 2402314..2403024 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SH07_RS11900 () | 2403132..2403437 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.001 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |