MGE detailed information
MGE type: Prophage MGE length: 54789 bp
Accession: NZ_CP010443 Location: 2357601..2412389 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010443 Location: 2357601..2412389 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH04_RS11575 () | 2353704..2354690 | - | 987 | Protein_2172 | GGDEF domain-containing protein | - |
| SH04_RS11580 () | 2354763..2355122 | - | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| SH04_RS11585 () | 2355122..2356048 | - | 927 | WP_000257409.1 | glutaminase B | - |
| SH04_RS11590 () | 2356112..2357500 | - | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| SH04_RS11595 () | 2357601..2358482 | + | 882 | WP_000366501.1 | hypothetical protein | VF |
| SH04_RS11600 () | 2358560..2359675 | + | 1116 | WP_000258599.1 | putative protein YneK | - |
| SH04_RS11605 () | 2359825..2361015 | + | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| SH04_RS11610 () | 2361040..2361705 | - | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| SH04_RS11615 () | 2361917..2362351 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| SH04_RS11620 () | 2362371..2362754 | + | 384 | WP_000091199.1 | hypothetical protein | VF |
| SH04_RS11625 () | 2362786..2363004 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| SH04_RS11630 () | 2363035..2363934 | - | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| SH04_RS11635 () | 2364129..2365316 | + | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| SH04_RS11640 () | 2365443..2365538 | + | 96 | WP_000901367.1 | protein MgtS | - |
| SH04_RS11645 () | 2365757..2366647 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| SH04_RS11650 () | 2366902..2367294 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| SH04_RS11655 () | 2367570..2368088 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| SH04_RS11660 () | 2368132..2370177 | - | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| SH04_RS11665 () | 2370314..2371060 | + | 747 | WP_000636571.1 | hypothetical protein | VF |
| SH04_RS11670 () | 2371149..2371835 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH04_RS11675 () | 2372012..2372215 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH04_RS11680 () | 2372250..2373710 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH04_RS11685 () | 2373799..2375166 | - | 1368 | Protein_2194 | MHS family MFS transporter | - |
| SH04_RS25560 () | 2375687..2375800 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH04_RS11690 () | 2375869..2376102 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH04_RS11695 () | 2376419..2377009 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH04_RS11700 () | 2377107..2377682 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH04_RS11705 () | 2377682..2378644 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH04_RS11710 () | 2378595..2379164 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH04_RS11715 () | 2379553..2379786 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH04_RS11720 () | 2379844..2380254 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH04_RS11725 () | 2380406..2380579 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH04_RS11730 () | 2380751..2380906 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH04_RS25565 () | 2380985..2381050 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH04_RS24005 () | 2381053..2381241 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH04_RS11735 () | 2381252..2381464 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH04_RS11740 () | 2381827..2382324 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH04_RS11745 () | 2382321..2382854 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH04_RS11750 () | 2382851..2383162 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH04_RS11755 () | 2383167..2383382 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH04_RS11760 () | 2384136..2384351 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH04_RS11765 () | 2384652..2384864 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH04_RS25570 () | 2384919..2385008 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH04_RS11770 () | 2385286..2386038 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH04_RS11775 () | 2386052..2387101 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH04_RS11780 () | 2387103..2387381 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH04_RS11785 () | 2387448..2387699 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH04_RS11790 () | 2387916..2388071 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH04_RS11795 () | 2388143..2388430 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH04_RS11800 () | 2388430..2388669 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH04_RS24010 () | 2388694..2388999 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH04_RS11805 () | 2389202..2389534 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH04_RS22970 () | 2389971..2390120 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH04_RS11810 () | 2390155..2390433 | - | 279 | Protein_2225 | hypothetical protein | - |
| SH04_RS11815 () | 2390417..2390647 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH04_RS11820 () | 2390731..2391138 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH04_RS11825 () | 2391305..2391460 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH04_RS11830 () | 2391620..2391838 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH04_RS11840 () | 2392406..2392594 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH04_RS11845 () | 2392591..2392782 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH04_RS24025 () | 2392875..2393642 | + | 768 | Protein_2232 | exonuclease | - |
| SH04_RS11855 () | 2393639..2394334 | + | 696 | Protein_2233 | IS3 family transposase IS2 | Transposase |
| SH04_RS25580 () | 2394348..2395505 | + | 1158 | Protein_2234 | hypothetical protein ; Integrase | Integrase |
| SH04_RS25070 () | 2395525..2395635 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH04_RS11865 () | 2395693..2396712 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH04_RS11870 () | 2396724..2397938 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH04_RS11875 () | 2398144..2398470 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH04_RS11880 () | 2398605..2398946 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH04_RS11885 () | 2398981..2399541 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH04_RS11890 () | 2399544..2400254 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SH04_RS11895 () | 2400362..2400667 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| SH04_RS11900 () | 2400866..2403292 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| SH04_RS11905 () | 2403353..2405776 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| SH04_RS11910 () | 2405787..2406404 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| SH04_RS11915 () | 2406406..2407260 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| SH04_RS11920 () | 2407303..2407917 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| SH04_RS11925 () | 2408076..2409368 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| SH04_RS11930 () | 2409321..2410016 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| SH04_RS11935 () | 2410141..2411361 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| SH04_RS11940 () | 2411496..2412389 | - | 894 | WP_001019525.1 | hypothetical protein | VF |
| SH04_RS11945 () | 2412496..2413749 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| SH04_RS25915 () | 2413798..2413917 | - | 120 | WP_001299090.1 | hypothetical protein | - |
| SH04_RS11950 () | 2414173..2414481 | + | 309 | WP_210406531.1 | acid resistance repetitive basic protein Asr | - |
| SH04_RS11955 () | 2414574..2414657 | + | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| SH04_RS11960 () | 2414757..2415578 | + | 822 | WP_001260865.1 | serine protease | - |
| SH04_RS11965 () | 2415617..2415946 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| SH04_RS11970 () | 2415933..2416298 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |