MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP010442 Location: 2427371..2449077 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010442 Location: 2427371..2449077 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH06_RS11985 () | 2423886..2424632 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH06_RS11990 () | 2424721..2425407 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH06_RS11995 () | 2425584..2425787 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH06_RS12000 () | 2425822..2427282 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH06_RS12005 () | 2427371..2428738 | - | 1368 | Protein_2254 | MHS family MFS transporter | - |
| SH06_RS25945 () | 2429259..2429372 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH06_RS12010 () | 2429441..2429674 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH06_RS12015 () | 2429991..2430581 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH06_RS12020 () | 2430679..2431254 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH06_RS12025 () | 2431254..2432216 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH06_RS12030 () | 2432167..2432736 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH06_RS12035 () | 2433125..2433358 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH06_RS12040 () | 2433416..2433826 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH06_RS12045 () | 2433978..2434151 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH06_RS12050 () | 2434323..2434478 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH06_RS25950 () | 2434557..2434622 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH06_RS24350 () | 2434625..2434813 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH06_RS12055 () | 2434824..2435036 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH06_RS12060 () | 2435399..2435896 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH06_RS12065 () | 2435893..2436426 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH06_RS12070 () | 2436423..2436734 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH06_RS12075 () | 2436739..2436954 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH06_RS12080 () | 2437708..2437923 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH06_RS12085 () | 2438224..2438436 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH06_RS25955 () | 2438491..2438580 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH06_RS12090 () | 2438858..2439610 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH06_RS12095 () | 2439624..2440673 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH06_RS12100 () | 2440675..2440953 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH06_RS12105 () | 2441020..2441271 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH06_RS12110 () | 2441488..2441643 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH06_RS12115 () | 2441715..2442002 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH06_RS12120 () | 2442002..2442241 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH06_RS24355 () | 2442266..2442571 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH06_RS12125 () | 2442774..2443106 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH06_RS23285 () | 2443543..2443692 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH06_RS12130 () | 2443727..2444005 | - | 279 | Protein_2285 | hypothetical protein | - |
| SH06_RS12135 () | 2443989..2444219 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH06_RS12140 () | 2444303..2444710 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH06_RS12145 () | 2444877..2445032 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH06_RS12150 () | 2445192..2445410 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH06_RS12160 () | 2445978..2446166 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH06_RS12165 () | 2446163..2446354 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH06_RS24370 () | 2446447..2447214 | + | 768 | Protein_2292 | exonuclease | - |
| SH06_RS12175 () | 2447211..2447906 | + | 696 | Protein_2293 | IS3 family transposase IS2 | Transposase |
| SH06_RS25965 () | 2447920..2449077 | + | 1158 | Protein_2294 | Aldo-keto reductase IolS ; Integrase | Integrase |
| SH06_RS25425 () | 2449097..2449207 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH06_RS12185 () | 2449265..2450284 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH06_RS12190 () | 2450296..2451510 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH06_RS12195 () | 2451716..2452042 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH06_RS12200 () | 2452177..2452518 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH06_RS12205 () | 2452553..2453113 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH06_RS12210 () | 2453116..2453826 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |