MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP010442 Location: 2208369..2230043 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010442 Location: 2208369..2230043 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH06_RS10960 () | 2204419..2205402 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| SH06_RS10970 () | 2205880..2207253 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| SH06_RS10975 () | 2207382..2208317 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| SH06_RS24240 () | 2208369..2209604 | - | 1236 | WP_000040852.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SH06_RS10985 () | 2209606..2209821 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| SH06_RS10990 () | 2209900..2210109 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2209925..2210103 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209925..2210103 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209925..2210103 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2209925..2210103 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| SH06_RS10995 () | 2210102..2210296 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| SH06_RS11000 () | 2210353..2211162 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| SH06_RS11005 () | 2211155..2213755 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| SH06_RS11010 () | 2213857..2214132 | - | 276 | WP_000632297.1 | protein RacC | - |
| SH06_RS11015 () | 2214207..2214377 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| SH06_RS11020 () | 2214377..2214598 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| SH06_RS11025 () | 2215040..2215528 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| SH06_RS23180 () | 2215525..2215680 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| SH06_RS11030 () | 2216134..2216610 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| SH06_RS11035 () | 2216734..2217030 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| SH06_RS11040 () | 2217053..2217475 | + | 423 | WP_000693797.1 | phage protein | - |
| SH06_RS11045 () | 2217488..2218345 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| SH06_RS11050 () | 2218352..2219098 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| SH06_RS11055 () | 2219121..2219573 | + | 453 | Protein_2070 | DUF1627 domain-containing protein | - |
| SH06_RS25375 () | 2219769..2219954 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| SH06_RS11065 () | 2220151..2221608 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| SH06_RS11070 () | 2221746..2222009 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| SH06_RS11075 () | 2221990..2222349 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| SH06_RS11085 () | 2222823..2223755 | + | 933 | Protein_2075 | phage tail length tape measure family protein | - |
| SH06_RS11090 () | 2223758..2223973 | + | 216 | Protein_2076 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH06_RS11095 () | 2224115..2225095 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| SH06_RS25380 () | 2225165..2225353 | + | 189 | Protein_2078 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH06_RS24265 () | 2225418..2228780 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SH06_RS11120 () | 2228780..2229355 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| SH06_RS11125 () | 2229453..2230043 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH06_RS11130 () | 2230360..2230593 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH06_RS25910 () | 2230662..2230775 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| SH06_RS11135 () | 2231554..2231988 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| SH06_RS11140 () | 2232129..2233262 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |