MGE detailed information
MGE type: Prophage MGE length: 21674 bp
Accession: NZ_CP010441 Location: 2155573..2177246 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010441 Location: 2155573..2177246 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH03_RS10650 () | 2151623..2152606 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| SH03_RS10660 () | 2153084..2154457 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| SH03_RS10665 () | 2154586..2155521 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| SH03_RS23895 () | 2155573..2156808 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| SH03_RS10675 () | 2156810..2157025 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| SH03_RS10680 () | 2157104..2157313 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2157129..2157307 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2157129..2157307 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2157129..2157307 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2157129..2157307 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| SH03_RS10685 () | 2157306..2157500 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| SH03_RS10690 () | 2157557..2158366 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| SH03_RS10695 () | 2158359..2160959 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| SH03_RS10700 () | 2161061..2161336 | - | 276 | WP_000632297.1 | protein RacC | - |
| SH03_RS10705 () | 2161411..2161581 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| SH03_RS10710 () | 2161581..2161802 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| SH03_RS10715 () | 2162244..2162732 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| SH03_RS22875 () | 2162729..2162884 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| SH03_RS10720 () | 2163338..2163814 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| SH03_RS10725 () | 2163938..2164234 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| SH03_RS10730 () | 2164257..2164679 | + | 423 | WP_000693797.1 | phage protein | - |
| SH03_RS10735 () | 2164692..2165549 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| SH03_RS10740 () | 2165556..2166302 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| SH03_RS10745 () | 2166325..2166777 | + | 453 | Protein_2011 | DUF1627 domain-containing protein | - |
| SH03_RS25030 () | 2166973..2167158 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| SH03_RS10755 () | 2167355..2168812 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| SH03_RS10760 () | 2168949..2169212 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| SH03_RS10765 () | 2169193..2169552 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| SH03_RS10775 () | 2170026..2170958 | + | 933 | Protein_2016 | phage tail length tape measure family protein | - |
| SH03_RS10780 () | 2170961..2171176 | + | 216 | Protein_2017 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH03_RS10785 () | 2171318..2172298 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| SH03_RS25035 () | 2172368..2172556 | + | 189 | Protein_2019 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH03_RS23920 () | 2172621..2175983 | + | 3363 | WP_071842875.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SH03_RS10810 () | 2175983..2176558 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| SH03_RS10815 () | 2176656..2177246 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH03_RS10820 () | 2177563..2177796 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH03_RS25535 () | 2177865..2177978 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| SH03_RS10825 () | 2178757..2179191 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| SH03_RS10830 () | 2179332..2180465 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |