MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP010440 Location: 2388114..2409820 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010440 Location: 2388114..2409820 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH08_RS11770 () | 2384629..2385375 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH08_RS11775 () | 2385464..2386150 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH08_RS11780 () | 2386327..2386530 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH08_RS11785 () | 2386565..2388025 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH08_RS11790 () | 2388114..2389481 | - | 1368 | Protein_2220 | MHS family MFS transporter | - |
| SH08_RS25740 () | 2390002..2390115 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH08_RS11795 () | 2390184..2390417 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH08_RS11800 () | 2390734..2391324 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH08_RS11805 () | 2391422..2391997 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH08_RS11810 () | 2391997..2392959 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH08_RS11815 () | 2392910..2393479 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH08_RS11820 () | 2393868..2394101 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH08_RS11825 () | 2394159..2394569 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH08_RS11830 () | 2394721..2394894 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH08_RS11835 () | 2395066..2395221 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH08_RS25745 () | 2395300..2395365 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH08_RS24145 () | 2395368..2395556 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH08_RS11840 () | 2395567..2395779 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH08_RS11845 () | 2396142..2396639 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH08_RS11850 () | 2396636..2397169 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH08_RS11855 () | 2397166..2397477 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH08_RS11860 () | 2397482..2397697 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH08_RS11865 () | 2398451..2398666 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH08_RS11870 () | 2398967..2399179 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH08_RS25750 () | 2399234..2399323 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH08_RS11875 () | 2399601..2400353 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH08_RS11880 () | 2400367..2401416 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH08_RS11885 () | 2401418..2401696 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH08_RS11890 () | 2401763..2402014 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH08_RS11895 () | 2402231..2402386 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH08_RS11900 () | 2402458..2402745 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH08_RS11905 () | 2402745..2402984 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH08_RS24150 () | 2403009..2403314 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH08_RS11910 () | 2403517..2403849 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH08_RS23075 () | 2404286..2404435 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH08_RS11915 () | 2404470..2404748 | - | 279 | Protein_2251 | hypothetical protein | - |
| SH08_RS11920 () | 2404732..2404962 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH08_RS11925 () | 2405046..2405453 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH08_RS11930 () | 2405620..2405775 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH08_RS11935 () | 2405935..2406153 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH08_RS11945 () | 2406721..2406909 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH08_RS11950 () | 2406906..2407097 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH08_RS24165 () | 2407190..2407957 | + | 768 | Protein_2258 | exonuclease | - |
| SH08_RS11960 () | 2407954..2408649 | + | 696 | Protein_2259 | IS3 family transposase IS2 | Transposase |
| SH08_RS25760 () | 2408663..2409820 | + | 1158 | Protein_2260 | Putative defective protein IntQ ; Integrase | Integrase |
| SH08_RS25240 () | 2409840..2409950 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH08_RS11970 () | 2410008..2411027 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH08_RS11975 () | 2411039..2412253 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH08_RS11980 () | 2412459..2412785 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH08_RS11985 () | 2412920..2413261 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH08_RS11990 () | 2413296..2413856 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH08_RS11995 () | 2413859..2414569 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |