MGE detailed information
MGE type: Prophage MGE length: 21674 bp
Accession: NZ_CP010440 Location: 2169121..2190794 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010440 Location: 2169121..2190794 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH08_RS10745 () | 2165171..2166154 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| SH08_RS10755 () | 2166632..2168005 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| SH08_RS10760 () | 2168134..2169069 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| SH08_RS24035 () | 2169121..2170356 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| SH08_RS10770 () | 2170358..2170573 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| SH08_RS10775 () | 2170652..2170861 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2170677..2170855 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2170677..2170855 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2170677..2170855 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2170677..2170855 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| SH08_RS10780 () | 2170854..2171048 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| SH08_RS10785 () | 2171105..2171914 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| SH08_RS10790 () | 2171907..2174507 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| SH08_RS10795 () | 2174609..2174884 | - | 276 | WP_000632297.1 | protein RacC | - |
| SH08_RS10800 () | 2174959..2175129 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| SH08_RS10805 () | 2175129..2175350 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| SH08_RS10810 () | 2175792..2176280 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| SH08_RS22970 () | 2176277..2176432 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| SH08_RS10815 () | 2176886..2177362 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| SH08_RS10820 () | 2177486..2177782 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| SH08_RS10825 () | 2177805..2178227 | + | 423 | WP_000693797.1 | phage protein | - |
| SH08_RS10830 () | 2178240..2179097 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| SH08_RS10835 () | 2179104..2179850 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| SH08_RS10840 () | 2179873..2180325 | + | 453 | Protein_2036 | DUF1627 domain-containing protein | - |
| SH08_RS25180 () | 2180521..2180706 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| SH08_RS10850 () | 2180903..2182360 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| SH08_RS10855 () | 2182497..2182760 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| SH08_RS10860 () | 2182741..2183100 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| SH08_RS10870 () | 2183574..2184506 | + | 933 | Protein_2041 | phage tail length tape measure family protein | - |
| SH08_RS10875 () | 2184509..2184724 | + | 216 | Protein_2042 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH08_RS10880 () | 2184866..2185846 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| SH08_RS25185 () | 2185916..2186104 | + | 189 | Protein_2044 | Ail/Lom family outer membrane beta-barrel protein | - |
| SH08_RS24060 () | 2186169..2189531 | + | 3363 | WP_071842875.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SH08_RS10905 () | 2189531..2190106 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| SH08_RS10910 () | 2190204..2190794 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH08_RS10915 () | 2191111..2191344 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH08_RS25705 () | 2191413..2191526 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| SH08_RS10920 () | 2192305..2192739 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| SH08_RS10925 () | 2192880..2194013 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |