MGE detailed information
MGE type: Prophage MGE length: 22914 bp
Accession: NZ_CP010438 Location: 2386667..2409580 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010438 Location: 2386667..2409580 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH05_RS11775 () | 2383182..2383928 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH05_RS11780 () | 2384017..2384703 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH05_RS11785 () | 2384880..2385083 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH05_RS11790 () | 2385118..2386578 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH05_RS11795 () | 2386667..2388034 | - | 1368 | Protein_2219 | MHS family MFS transporter | - |
| SH05_RS25710 () | 2388555..2388668 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH05_RS11800 () | 2388737..2388970 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH05_RS11805 () | 2389287..2389877 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH05_RS11810 () | 2389975..2390550 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH05_RS11815 () | 2390550..2391512 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH05_RS11820 () | 2391463..2392032 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH05_RS11825 () | 2392421..2392654 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH05_RS11830 () | 2392712..2393122 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH05_RS11835 () | 2393274..2393447 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH05_RS11840 () | 2393619..2393774 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH05_RS25715 () | 2393853..2393918 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH05_RS24145 () | 2393921..2394109 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH05_RS11845 () | 2394120..2394332 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH05_RS11850 () | 2394695..2395192 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH05_RS11855 () | 2395189..2395722 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH05_RS11860 () | 2395719..2396030 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH05_RS11865 () | 2396035..2396250 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH05_RS11870 () | 2397004..2397219 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH05_RS11875 () | 2397520..2397732 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH05_RS25720 () | 2397787..2397876 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH05_RS11880 () | 2398154..2398906 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH05_RS11885 () | 2398920..2399969 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH05_RS11890 () | 2399971..2400249 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH05_RS11895 () | 2400316..2400567 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH05_RS11900 () | 2400784..2400939 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH05_RS11905 () | 2401011..2401298 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH05_RS11910 () | 2401298..2401537 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH05_RS24150 () | 2401562..2401867 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH05_RS11915 () | 2402070..2402402 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH05_RS23080 () | 2402839..2402988 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH05_RS11920 () | 2403023..2403301 | - | 279 | Protein_2250 | hypothetical protein | - |
| SH05_RS11925 () | 2403285..2403515 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH05_RS11930 () | 2403599..2404006 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH05_RS11935 () | 2404173..2404328 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH05_RS11940 () | 2404488..2404706 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH05_RS11950 () | 2405274..2405462 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH05_RS11955 () | 2405459..2405650 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH05_RS24165 () | 2405743..2406510 | + | 768 | Protein_2257 | exonuclease | - |
| SH05_RS11965 () | 2406507..2407202 | + | 696 | Protein_2258 | IS3 family transposase IS2 | Transposase |
| SH05_RS25730 () | 2407216..2408373 | + | 1158 | Protein_2259 | Putative defective protein IntQ ; Integrase | Integrase |
| SH05_RS25215 () | 2408393..2408503 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH05_RS11975 () | 2408561..2409580 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH05_RS11980 () | 2409592..2410806 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH05_RS11985 () | 2411012..2411338 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH05_RS11990 () | 2411473..2411814 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH05_RS11995 () | 2411849..2412409 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH05_RS12000 () | 2412412..2413122 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SH05_RS12005 () | 2413230..2413535 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.001 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |