MGE detailed information
MGE type: Genomic_island MGE length: 111957 bp
Accession: NZ_CP010170 Location: 3889885..4001841 Organism: Escherichia coli strain H6 Replicon: chromosome
Accession: NZ_CP010170 Location: 3889885..4001841 Organism: Escherichia coli strain H6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG48_RS20365 () | 3885601..3886269 | + | 669 | WP_001209100.1 | hypothetical protein | - |
| RG48_RS20380 () | 3886512..3887207 | - | 696 | WP_000370307.1 | lactate utilization protein C | - |
| RG48_RS20385 () | 3887200..3888627 | - | 1428 | WP_000023927.1 | iron-sulfur cluster-binding protein | - |
| RG48_RS20390 () | 3888638..3889357 | - | 720 | WP_001102100.1 | (Fe-S)-binding protein | - |
| RG48_RS20395 () | 3889885..3890739 | - | 855 | WP_000339601.1 | DNA-binding transcriptional regulator RclR | - |
| RG48_RS20400 () | 3890965..3892290 | + | 1326 | WP_001046293.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| RG48_RS20405 () | 3892399..3892635 | + | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| RG48_RS20410 () | 3892647..3893240 | + | 594 | WP_001306921.1 | reactive chlorine species resistance protein RclC | - |
| RG48_RS25955 () | 3893399..3893527 | - | 129 | Protein_3706 | aldo/keto reductase | - |
| RG48_RS20415 () | 3893830..3894681 | + | 852 | WP_000621009.1 | Right origin-binding protein | VF |
| RG48_RS20420 () | 3894821..3899077 | - | 4257 | WP_073464891.1 | Invasin | VF |
| RG48_RS20430 () | 3900192..3900293 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| RG48_RS20435 () | 3900657..3900920 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| RG48_RS20440 () | 3900920..3901060 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| RG48_RS20445 () | 3901095..3901322 | - | 228 | WP_001147279.1 | hypothetical protein | - |
| RG48_RS20455 () | 3902145..3902687 | + | 543 | WP_149025519.1 | HTH-type transcriptional regulator EcpR | VF |
| RG48_RS20460 () | 3902762..3903349 | + | 588 | WP_000730972.1 | Common pilus major fimbrillin subunit EcpA | VF |
| RG48_RS20465 () | 3903407..3904075 | + | 669 | WP_000716398.1 | putative fimbrial chaperone EcpB | VF |
| RG48_RS20470 () | 3904101..3906626 | + | 2526 | WP_073464895.1 | putative outer membrane usher protein EcpC | VF |
| RG48_RS20475 () | 3906616..3908233 | + | 1618 | Protein_3717 | Fimbria adhesin EcpD | VF |
| RG48_RS20480 () | 3908202..3908912 | + | 711 | WP_001301243.1 | putative fimbrial chaperone EcpE | VF |
| RG48_RS20485 () | 3909225..3909554 | + | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| RG48_RS20495 () | 3909802..3910416 | - | 615 | WP_001019920.1 | YagU family protein | - |
| RG48_RS20505 () | 3910834..3911523 | + | 690 | WP_001543517.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| RG48_RS20510 () | 3911520..3912476 | + | 957 | WP_000643332.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| RG48_RS20515 () | 3912473..3914671 | + | 2199 | WP_073464897.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| RG48_RS20520 () | 3914681..3915637 | + | 957 | WP_073464899.1 | molybdenum cofactor insertion chaperone PaoD | - |
| RG48_RS20525 () | 3915688..3916026 | + | 339 | Protein_3725 | LysR family transcriptional regulator | - |
| RG48_RS20530 () | 3916434..3916646 | + | 213 | Protein_3726 | IS3 family transposase ISEc48 | Transposase |
| RG48_RS20535 () | 3916688..3917431 | - | 744 | WP_032170462.1 | AraC family transcriptional regulator | - |
| RG48_RS20545 () | 3917939..3918636 | - | 698 | Protein_3728 | IS1 family transposase IS1R | Transposase |
| RG48_RS20565 () | 3918665..3918979 | - | 315 | WP_000951129.1 | hypothetical protein | - |
| RG48_RS26290 () | 3919141..3919197 | + | 57 | WP_211180520.1 | protein YsgD | - |
| RG48_RS20575 () | 3919349..3920299 | + | 951 | WP_000947148.1 | magnesium/cobalt transporter CorA | - |
| RG48_RS20595 () | 3920453..3921150 | + | 698 | Protein_3732 | IS1 family transposase IS1R | Transposase |
| RG48_RS20600 () | 3921166..3921432 | + | 267 | Protein_3733 | inovirus-type Gp2 protein | - |
| RG48_RS20605 () | 3921488..3922144 | - | 657 | WP_003029581.1 | IS66 family transposase ISKpn24 | Transposase |
| RG48_RS20610 () | 3922173..3922481 | - | 309 | WP_003029582.1 | maltose O-acetyltransferase | - |
| RG48_RS20615 () | 3922991..3923161 | + | 171 | WP_077258089.1 | helix-turn-helix domain-containing protein | - |
| RG48_RS20620 () | 3923390..3924313 | + | 924 | WP_003029584.1 | aminoimidazole riboside kinase | - |
| RG48_RS20625 () | 3924479..3925996 | + | 1518 | WP_003029587.1 | carbohydrate porin | - |
| RG48_RS20630 () | 3926134..3927504 | + | 1371 | WP_000345204.1 | sucrose-specific PTS transporter subunit IIBC | - |
| RG48_RS20635 () | 3927504..3928904 | + | 1401 | WP_003029589.1 | sucrose-6-phosphate hydrolase | - |
| RG48_RS20640 () | 3928934..3929938 | + | 1005 | WP_003029591.1 | LacI family DNA-binding transcriptional regulator | - |
| RG48_RS26140 () | 3930074..3930207 | - | 134 | Protein_3742 | transposase | - |
| RG48_RS20650 () | 3930372..3931589 | - | 1218 | Protein_3743 | group II intron reverse transcriptase/maturase | - |
| RG48_RS20655 () | 3931588..3931896 | + | 309 | Protein_3744 | IS1 family transposase IS1X2 | Transposase |
| RG48_RS20660 () | 3932399..3945778 | + | 13380 | WP_073464902.1 | tandem-95 repeat protein | - |
| RG48_RS20665 () | 3945855..3947774 | + | 1920 | WP_000989158.1 | TolC family protein | - |
| RG48_RS20670 () | 3947789..3948670 | + | 882 | WP_073464904.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RG48_RS20675 () | 3948667..3950016 | + | 1350 | WP_001548176.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| RG48_RS20680 () | 3950018..3952150 | + | 2133 | WP_001548175.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| RG48_RS20685 () | 3952529..3952819 | + | 291 | Protein_3750 | Tn3 family transposase | - |
| RG48_RS20690 () | 3952968..3953948 | - | 981 | WP_032216024.1 | IS5 family transposase ISKpn26 | Transposase |
| RG48_RS20695 () | 3954299..3955162 | + | 864 | WP_016243443.1 | GTPase family protein | - |
| RG48_RS20700 () | 3955189..3955524 | + | 336 | Protein_3753 | hypothetical protein | VF |
| RG48_RS20705 () | 3955741..3956442 | + | 702 | WP_073464907.1 | WYL domain-containing protein | - |
| RG48_RS20710 () | 3956483..3956719 | + | 237 | WP_045341362.1 | hypothetical protein | - |
| RG48_RS20715 () | 3956719..3957108 | + | 390 | WP_073464909.1 | hypothetical protein | - |
| RG48_RS20725 () | 3957395..3957880 | + | 486 | Protein_3757 | IS3 family transposase ISEhe3 | Transposase |
| RG48_RS20730 () | 3958058..3958294 | - | 237 | WP_032181179.1 | hypothetical protein | - |
| RG48_RS20735 () | 3958312..3961383 | - | 3072 | WP_049002937.1 | DEAD/DEAH box helicase family protein | - |
| RG48_RS20740 () | 3961395..3963260 | - | 1866 | WP_049002935.1 | site-specific DNA-methyltransferase | - |
| RG48_RS20745 () | 3963320..3964729 | - | 1410 | WP_032181185.1 | DUF2130 domain-containing protein | - |
| RG48_RS20750 () | 3964732..3966612 | - | 1881 | WP_032181187.1 | ATP-dependent endonuclease | - |
| RG48_RS20755 () | 3966647..3967336 | - | 690 | WP_032181188.1 | DUF4391 domain-containing protein | - |
| RG48_RS20760 () | 3967333..3970611 | - | 3279 | WP_032181190.1 | DEAD/DEAH box helicase family protein | - |
| RG48_RS20765 () | 3970611..3971516 | - | 906 | WP_016243836.1 | WYL domain-containing protein | - |
| RG48_RS20770 () | 3971958..3972821 | + | 864 | WP_032181192.1 | GTPase family protein | - |
| RG48_RS20775 () | 3972913..3973734 | + | 822 | WP_049120334.1 | DUF945 domain-containing protein | - |
| RG48_RS20780 () | 3973951..3974652 | + | 702 | Protein_3768 | WYL domain-containing protein | - |
| RG48_RS20785 () | 3974693..3974929 | + | 237 | WP_045341362.1 | hypothetical protein | - |
| RG48_RS20790 () | 3974929..3975372 | + | 444 | WP_000824224.1 | hypothetical protein | - |
| RG48_RS25960 () | 3975395..3975622 | + | 228 | WP_075204105.1 | hypothetical protein | - |
| RG48_RS20800 () | 3975619..3976077 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| RG48_RS20805 () | 3976093..3976569 | + | 477 | WP_000811693.1 | RadC family protein | - |
| RG48_RS20810 () | 3976578..3976799 | + | 222 | WP_001568590.1 | DUF987 domain-containing protein | - |
| RG48_RS20815 () | 3976818..3977135 | + | 318 | WP_000070396.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| RG48_RS20820 () | 3977156..3977497 | + | 342 | WP_000854680.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| RG48_RS20830 () | 3978070..3979323 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| RG48_RS20835 () | 3979335..3980438 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| RG48_RS20840 () | 3980726..3981781 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| RG48_RS20845 () | 3981820..3982221 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| RG48_RS20850 () | 3982279..3983523 | - | 1245 | WP_073464911.1 | esterase FrsA | - |
| - () | 3982939..3983019 | - | 81 | NuclAT_10 | - | - |
| - () | 3982939..3983019 | - | 81 | NuclAT_10 | - | - |
| - () | 3982939..3983019 | - | 81 | NuclAT_10 | - | - |
| - () | 3982939..3983019 | - | 81 | NuclAT_10 | - | - |
| RG48_RS20855 () | 3983615..3984073 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| RG48_RS20860 () | 3984334..3985791 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| RG48_RS20865 () | 3985848..3986369 | - | 522 | Protein_3784 | peptide chain release factor H | - |
| RG48_RS20870 () | 3986368..3986571 | - | 204 | Protein_3785 | RNA ligase RtcB family protein | - |
| RG48_RS20875 () | 3986817..3987269 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| RG48_RS20880 () | 3987279..3987677 | - | 399 | WP_073464912.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| RG48_RS20885 () | 3987680..3987973 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| RG48_RS20890 () | 3988025..3989080 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| RG48_RS20895 () | 3989151..3989936 | - | 786 | WP_000207587.1 | Chemotaxis protein LafU | VF |
| RG48_RS20900 () | 3989908..3991620 | + | 1713 | Protein_3791 | Flagellar biosynthesis protein FlhA | VF |
| RG48_RS20915 () | 3991844..3992341 | - | 498 | WP_000006242.1 | REP-associated tyrosine transposase RayT | - |
| RG48_RS20920 () | 3992517..3993266 | - | 750 | WP_000093940.1 | Murein DD-endopeptidase MepH | VF |
| RG48_RS20925 () | 3993567..3994307 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| RG48_RS20930 () | 3994278..3995045 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| RG48_RS20935 () | 3995251..3995829 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| RG48_RS20940 () | 3996069..3998513 | + | 2445 | WP_073464915.1 | Acyl-coenzyme A dehydrogenase | VF |
| RG48_RS20945 () | 3998556..3999002 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| RG48_RS20950 () | 3999183..3999953 | + | 771 | WP_073464917.1 | 2-oxoglutaramate amidase | - |
| RG48_RS20955 () | 3999995..4001131 | - | 1137 | Protein_3800 | ISAs1 family transposase ISEc1 | Transposase |
| RG48_RS20960 () | 4001392..4001841 | - | 450 | WP_000978828.1 | hypothetical protein | - |
| RG48_RS20965 () | 4001853..4006109 | - | 4257 | WP_073464919.1 | RHS repeat protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|