MGE detailed information
MGE type: Conjugative plasmid MGE length: 128612 bp
Accession: NZ_CP010158 Location: 1..128612 Organism: Escherichia coli strain D10 Replicon: plasmid A
Accession: NZ_CP010158 Location: 1..128612 Organism: Escherichia coli strain D10 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG43_RS27015 () | 2862..3089 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| RG43_RS27020 () | 3089..3487 | + | 399 | WP_000911324.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| RG43_RS27025 () | 3496..5649 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| RG43_RS29325 () | 5902..6633 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| RG43_RS29330 () | 6658..7179 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| RG43_RS27035 () | 7212..10028 | - | 2817 | WP_073507088.1 | conjugal transfer mating pair stabilization protein TraG | - |
| RG43_RS27040 () | 10025..11398 | - | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| RG43_RS27045 () | 11398..11760 | - | 363 | WP_073507089.1 | P-type conjugative transfer protein TrbJ | - |
| RG43_RS27050 () | 11690..12235 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| RG43_RS27055 () | 12222..12506 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| RG43_RS27060 () | 12587..12901 | + | 315 | WP_000415567.1 | hypothetical protein | - |
| RG43_RS27065 () | 12903..13250 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| RG43_RS27070 () | 13266..14009 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| RG43_RS27075 () | 14002..14259 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| RG43_RS27080 () | 14286..16094 | - | 1809 | WP_000821847.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| RG43_RS27085 () | 16091..16729 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| RG43_RS27090 () | 16738..17730 | - | 993 | WP_000830187.1 | conjugal transfer pilus assembly protein TraU | - |
| RG43_RS27095 () | 17727..18359 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| RG43_RS27100 () | 18356..18742 | - | 387 | WP_000097319.1 | type-F conjugative transfer system protein TrbI | - |
| RG43_RS27105 () | 18739..21366 | - | 2628 | WP_001064247.1 | type IV secretion system protein TraC | - |
| RG43_RS27110 () | 21526..21747 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| RG43_RS27115 () | 21882..22397 | - | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RG43_RS27120 () | 22394..22645 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| RG43_RS27125 () | 22657..22887 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| RG43_RS27130 () | 22841..23431 | - | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| RG43_RS27135 () | 23421..24848 | - | 1428 | WP_000146692.1 | conjugal transfer protein TraB | - |
| RG43_RS27140 () | 24848..25552 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| RG43_RS27145 () | 25563..26129 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| RG43_RS27150 () | 26151..26462 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| RG43_RS27155 () | 26477..26842 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| RG43_RS27160 () | 26875..27270 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| RG43_RS27165 () | 27369..28058 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| RG43_RS27170 () | 28245..28628 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| RG43_RS27175 () | 28949..29551 | + | 603 | WP_000243709.1 | transglycosylase SLT domain-containing protein | - |
| RG43_RS27180 () | 29848..30669 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| RG43_RS27185 () | 30791..30988 | - | 198 | WP_052318758.1 | hypothetical protein | - |
| RG43_RS28590 () | 31102..31188 | - | 87 | WP_032147848.1 | hypothetical protein | - |
| RG43_RS27200 () | 31851..32009 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 32053..32277 | - | 225 | NuclAT_0 | - | - |
| - () | 32053..32277 | - | 225 | NuclAT_0 | - | - |
| - () | 32053..32277 | - | 225 | NuclAT_0 | - | - |
| - () | 32053..32277 | - | 225 | NuclAT_0 | - | - |
| RG43_RS29540 () | 32089..32277 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| RG43_RS27210 () | 32289..33008 | - | 720 | WP_001276228.1 | plasmid SOS inhibition protein A | - |
| RG43_RS27215 () | 33005..33439 | - | 435 | WP_000845895.1 | conjugation system SOS inhibitor PsiB | - |
| RG43_RS27220 () | 33494..35452 | - | 1959 | WP_073507090.1 | ParB/RepB/Spo0J family partition protein | - |
| RG43_RS27225 () | 35511..35744 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| RG43_RS27230 () | 35800..36327 | - | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| RG43_RS27250 () | 37230..37793 | - | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| RG43_RS27255 () | 37839..39200 | - | 1362 | WP_000170681.1 | DUF3560 domain-containing protein | - |
| RG43_RS27260 () | 39252..39482 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| RG43_RS29545 () | 40160..40488 | + | 329 | Protein_48 | pilus assembly protein | - |
| RG43_RS27285 () | 40476..40658 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| RG43_RS27290 () | 40658..41119 | - | 462 | WP_042007484.1 | DUF1380 family protein | - |
| RG43_RS27295 () | 41119..41421 | - | 303 | WP_072256028.1 | antirestriction protein | - |
| RG43_RS27305 () | 41946..42917 | + | 972 | WP_073507091.1 | IS110-like element ISEc32 family transposase | - |
| RG43_RS27310 () | 43178..43390 | - | 213 | WP_000092896.1 | hypothetical protein | - |
| RG43_RS27315 () | 43403..43660 | - | 258 | Protein_54 | hypothetical protein | - |
| RG43_RS27320 () | 43672..44368 | - | 697 | Protein_55 | IS1 family transposase | - |
| RG43_RS27340 () | 44422..44754 | - | 333 | Protein_56 | hypothetical protein | - |
| RG43_RS29550 () | 44823..45161 | - | 339 | WP_001513511.1 | hypothetical protein | - |
| RG43_RS27355 () | 45973..46944 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| RG43_RS27360 () | 46944..48110 | - | 1167 | WP_001238646.1 | plasmid-partitioning protein SopA | - |
| RG43_RS27365 () | 48410..49106 | - | 697 | Protein_60 | IS1 family transposase | - |
| RG43_RS27385 () | 49262..50764 | - | 1503 | WP_000715078.1 | hypothetical protein | - |
| RG43_RS27390 () | 51382..51831 | - | 450 | WP_000238252.1 | hypothetical protein | - |
| RG43_RS27395 () | 51949..52428 | + | 480 | WP_000190054.1 | hypothetical protein | - |
| RG43_RS27405 () | 52868..53530 | + | 663 | WP_000163251.1 | hypothetical protein | - |
| RG43_RS27410 () | 53541..54237 | - | 697 | Protein_65 | IS1 family transposase | - |
| RG43_RS27435 () | 54762..56963 | - | 2202 | WP_000973517.1 | ferric aerobactin receptor IutA | - |
| RG43_RS27440 () | 57045..58322 | - | 1278 | WP_001312878.1 | NADPH-dependent L-lysine N(6)-monooxygenase | - |
| RG43_RS27445 () | 58319..60061 | - | 1743 | WP_001015721.1 | aerobactin synthase IucC | - |
| RG43_RS27450 () | 60061..61008 | - | 948 | WP_000011907.1 | N(6)-hydroxylysine O-acetyltransferase | - |
| RG43_RS27455 () | 61009..62733 | - | 1725 | WP_000602863.1 | aerobactin synthase IucA | - |
| RG43_RS27460 () | 62869..64062 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| RG43_RS27465 () | 64442..64822 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| RG43_RS27475 () | 65163..65576 | - | 414 | Protein_73 | phosphopyruvate hydratase | - |
| RG43_RS28645 () | 65574..65831 | + | 258 | Protein_74 | Tn3 family transposase | - |
| RG43_RS27480 () | 66065..66922 | - | 858 | WP_000968139.1 | iron/manganese ABC transporter permease subunit SitD | - |
| RG43_RS27485 () | 66919..67776 | - | 858 | WP_073507092.1 | iron/manganese ABC transporter permease subunit SitC | - |
| RG43_RS27490 () | 67773..68600 | - | 828 | WP_000983712.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| RG43_RS27495 () | 68600..69514 | - | 915 | WP_000949004.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| RG43_RS27520 () | 69870..70567 | + | 698 | Protein_79 | IS1 family transposase | - |
| RG43_RS27525 () | 70747..71260 | - | 514 | Protein_80 | DUF4113 domain-containing protein | - |
| RG43_RS29335 () | 71321..71425 | - | 105 | Protein_81 | AAA family ATPase | - |
| RG43_RS28655 () | 71427..71750 | - | 324 | Protein_82 | helix-turn-helix domain-containing protein | - |
| RG43_RS27550 () | 72496..73473 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| RG43_RS27555 () | 73758..74498 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| RG43_RS27560 () | 74619..74807 | - | 189 | WP_001312821.1 | hypothetical protein | - |
| RG43_RS27565 () | 75181..76083 | - | 903 | WP_001312822.1 | antimicrobial resistance protein Mig-14 | - |
| RG43_RS27570 () | 76152..77261 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| RG43_RS27580 () | 77694..78647 | - | 954 | WP_000280980.1 | omptin family outer membrane protease | - |
| RG43_RS28660 () | 79920..80078 | - | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| RG43_RS27610 () | 80262..81475 | + | 1214 | WP_162842477.1 | IS3 family transposase | - |
| RG43_RS27615 () | 81623..81948 | - | 326 | Protein_91 | DDE-type integrase/transposase/recombinase | - |
| RG43_RS27620 () | 82929..84116 | + | 1188 | WP_000928803.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RG43_RS27625 () | 84113..86053 | + | 1941 | WP_000733250.1 | MacB family efflux pump subunit | - |
| RG43_RS27630 () | 86057..87427 | + | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| RG43_RS27640 () | 87901..88095 | + | 195 | Protein_95 | IS200/IS605-like element IS200C family transposase | - |
| RG43_RS27645 () | 88224..89165 | - | 942 | WP_000974762.1 | hypothetical protein | - |
| RG43_RS27655 () | 89400..90789 | - | 1390 | Protein_97 | ISNCY family transposase | - |
| RG43_RS29340 () | 91099..91248 | - | 150 | Protein_98 | IS3 family transposase | - |
| RG43_RS27670 () | 91426..92619 | - | 1194 | WP_000450495.1 | GTP-binding protein | - |
| RG43_RS28670 () | 93843..95072 | - | 1230 | Protein_100 | IS3 family transposase | - |
| RG43_RS27705 () | 95699..95992 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| RG43_RS27710 () | 96050..96249 | - | 200 | Protein_102 | lysis protein | - |
| RG43_RS28680 () | 96803..97904 | + | 1102 | Protein_103 | transposase | - |
| RG43_RS27740 () | 99140..100242 | + | 1103 | Protein_104 | salmochelin biosynthesis C-glycosyltransferase IroB | - |
| RG43_RS27745 () | 100382..104040 | + | 3659 | Protein_105 | salmochelin/enterobactin export ABC transporter IroC | - |
| RG43_RS27750 () | 104144..105373 | + | 1230 | WP_000933675.1 | catecholate siderophore esterase IroD | - |
| RG43_RS27755 () | 105458..106414 | + | 957 | WP_000271276.1 | catecholate siderophore esterase IroE | - |
| RG43_RS27760 () | 106459..107988 | - | 1530 | Protein_108 | siderophore salmochelin receptor IroN | - |
| RG43_RS27770 () | 108044..108741 | + | 698 | Protein_109 | IS1 family transposase | - |
| RG43_RS28685 () | 108755..108919 | - | 165 | Protein_110 | IS1 family transposase | - |
| RG43_RS27785 () | 109102..113235 | - | 4134 | WP_073507094.1 | temperature-sensitive protease autotransporter hemagglutinin Tsh | - |
| RG43_RS29345 () | 113403..113597 | + | 195 | Protein_112 | IS91 family transposase | - |
| RG43_RS29350 () | 113565..113780 | - | 216 | Protein_113 | helix-turn-helix transcriptional regulator | - |
| RG43_RS27805 () | 113876..114133 | + | 258 | Protein_114 | IS3 family transposase | - |
| RG43_RS27810 () | 114202..115353 | + | 1152 | WP_001254932.1 | IS30-like element IS30 family transposase | - |
| RG43_RS28700 () | 115366..115539 | - | 174 | Protein_116 | transposase | - |
| RG43_RS28705 () | 115596..116808 | + | 1213 | Protein_117 | IS3 family transposase | - |
| RG43_RS27840 () | 117085..117372 | - | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG43_RS27845 () | 117369..117620 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG43_RS27860 () | 118584..119441 | - | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| RG43_RS27865 () | 119434..119508 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| RG43_RS27875 () | 119734..119994 | - | 261 | WP_073507066.1 | replication regulatory protein RepA | - |
| RG43_RS27880 () | 120233..120806 | - | 574 | Protein_123 | DUF2726 domain-containing protein | - |
| RG43_RS27885 () | 120844..121053 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| RG43_RS27890 () | 121099..121560 | - | 462 | WP_001233871.1 | thermonuclease family protein | - |
| RG43_RS27895 () | 121803..122015 | - | 213 | WP_012311405.1 | hypothetical protein | - |
| RG43_RS27900 () | 122153..122713 | - | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| RG43_RS27905 () | 122768..123514 | - | 747 | WP_000205777.1 | conjugal transfer pilus acetylase TraX | - |
| RG43_RS27910 () | 123534..126029 | - | 2496 | Protein_129 | AAA family ATPase | - |
| RG43_RS27915 () | 126117..126863 | - | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
| RG43_RS27920 () | 126878..128419 | - | 1542 | WP_001298859.1 | IS21-like element ISEc12 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|