MGE detailed information
MGE type: Mobilizable plasmid MGE length: 112874 bp
Accession: NZ_CP010146 Location: 1..112874 Organism: Escherichia coli strain D5 Replicon: plasmid A
Accession: NZ_CP010146 Location: 1..112874 Organism: Escherichia coli strain D5 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG38_RS25110 () | 188..379 | + | 192 | Protein_1 | transposase | - |
| RG38_RS25120 () | 629..1504 | + | 876 | WP_073511583.1 | Beta-lactamase Toho-1 | ARG |
| RG38_RS25125 () | 1539..2507 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| RG38_RS25130 () | 2564..3661 | + | 1098 | Protein_4 | TonB-dependent receptor | - |
| RG38_RS25135 () | 3729..4265 | - | 537 | Protein_5 | PAS domain-containing protein | - |
| RG38_RS27860 () | 4525..4776 | + | 252 | Protein_6 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| RG38_RS25145 () | 4829..5533 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG38_RS25160 () | 6145..7032 | + | 888 | WP_050858703.1 | hypothetical protein | - |
| RG38_RS25165 () | 7048..7407 | + | 360 | WP_050858702.1 | hypothetical protein | - |
| RG38_RS25170 () | 7480..7986 | + | 507 | WP_000021766.1 | hypothetical protein | - |
| RG38_RS25175 () | 8251..11367 | - | 3117 | WP_016231376.1 | HsdR family type I site-specific deoxyribonuclease | - |
| RG38_RS25180 () | 11489..12097 | - | 609 | WP_073511585.1 | restriction endonuclease subunit S | - |
| RG38_RS25185 () | 12113..13669 | - | 1557 | WP_016231378.1 | type I restriction-modification system subunit M | - |
| RG38_RS25190 () | 13852..14073 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG38_RS25195 () | 14073..14453 | + | 381 | WP_001216045.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| RG38_RS25200 () | 14458..14637 | + | 180 | WP_000113019.1 | hypothetical protein | - |
| RG38_RS25205 () | 14665..15708 | + | 1044 | WP_016231380.1 | DUF968 domain-containing protein | - |
| RG38_RS25210 () | 15797..16249 | + | 453 | WP_050858701.1 | Late promoter-activating protein | - |
| RG38_RS25215 () | 16336..16888 | + | 553 | Protein_19 | hypothetical protein | - |
| RG38_RS25220 () | 16888..18372 | + | 1485 | WP_000124150.1 | terminase | - |
| RG38_RS25225 () | 18397..19248 | - | 852 | WP_000611656.1 | hypothetical protein | - |
| RG38_RS25230 () | 19359..19568 | - | 210 | WP_000874156.1 | hypothetical protein | - |
| RG38_RS25255 () | 19739..20436 | + | 698 | Protein_23 | IS1-like element IS1A family transposase | - |
| RG38_RS25260 () | 20453..21238 | + | 786 | Protein_24 | IS5 family transposase ISKpn26 | Transposase |
| RG38_RS25275 () | 21875..22096 | + | 222 | WP_000542335.1 | hypothetical protein | - |
| RG38_RS25280 () | 22104..23135 | + | 1032 | WP_050858708.1 | site-specific integrase | - |
| RG38_RS25285 () | 23186..23497 | + | 312 | WP_001224243.1 | hypothetical protein | - |
| RG38_RS25290 () | 23745..24305 | + | 561 | WP_050858709.1 | Ref family protein | - |
| RG38_RS25295 () | 24352..24906 | - | 555 | WP_001615576.1 | hypothetical protein | - |
| RG38_RS25300 () | 25189..25833 | + | 645 | WP_050858710.1 | hypothetical protein | - |
| RG38_RS25305 () | 25887..26576 | - | 690 | WP_050858711.1 | EAL domain-containing protein | - |
| RG38_RS25310 () | 26810..27531 | + | 722 | Protein_32 | AraC family transcriptional regulator | - |
| RG38_RS25315 () | 27570..27818 | - | 249 | WP_000747846.1 | hypothetical protein | - |
| RG38_RS25320 () | 27815..28255 | - | 441 | WP_023352064.1 | hypothetical protein | - |
| RG38_RS25325 () | 28289..30106 | - | 1818 | Protein_35 | helicase | - |
| RG38_RS25345 () | 30719..30970 | + | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG38_RS25350 () | 30967..31254 | + | 288 | WP_000222771.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG38_RS25355 () | 31544..31744 | - | 201 | WP_000896262.1 | DUF839 domain-containing protein | - |
| RG38_RS27130 () | 31734..31939 | + | 206 | Protein_39 | transposase | - |
| RG38_RS25360 () | 32114..35611 | - | 3498 | WP_001038839.1 | Outer membrane protein IcsA autotransporter | VF |
| RG38_RS25375 () | 37108..37805 | - | 698 | Protein_42 | IS1-like element IS1A family transposase | - |
| RG38_RS25395 () | 37897..38619 | - | 723 | WP_000133023.1 | hypothetical protein | - |
| RG38_RS25400 () | 38616..39101 | - | 486 | WP_072660833.1 | plasmid transfer protein | - |
| RG38_RS25405 () | 39859..40644 | + | 786 | Protein_45 | trhR | - |
| RG38_RS25410 () | 40666..41363 | - | 698 | Protein_46 | IS1-like element IS1A family transposase | - |
| RG38_RS25430 () | 41420..42892 | - | 1473 | Protein_47 | lytic transglycosylase domain-containing protein | - |
| RG38_RS25435 () | 42974..43855 | - | 882 | WP_000926346.1 | hypothetical protein | - |
| RG38_RS25440 () | 43870..44481 | - | 612 | WP_000523980.1 | hypothetical protein | - |
| RG38_RS25445 () | 44492..45058 | - | 567 | WP_000188920.1 | hypothetical protein | - |
| RG38_RS25450 () | 45139..45678 | - | 540 | WP_001033469.1 | DUF5384 family protein | - |
| RG38_RS25455 () | 45682..46194 | - | 513 | WP_000039791.1 | hypothetical protein | - |
| RG38_RS25465 () | 46816..47037 | + | 222 | WP_000245703.1 | host cell division inhibitor Icd-like protein | - |
| RG38_RS25470 () | 47034..48068 | + | 1035 | WP_032167064.1 | phage antirepressor KilAC domain-containing protein | - |
| RG38_RS25475 () | 48232..49032 | + | 801 | WP_001187871.1 | phage antirepressor KilAC domain-containing protein | - |
| RG38_RS25480 () | 49062..49907 | + | 846 | WP_032167063.1 | hypothetical protein | - |
| RG38_RS25485 () | 49958..50203 | + | 246 | WP_032167114.1 | hypothetical protein | - |
| RG38_RS25490 () | 50385..50540 | + | 156 | WP_001313475.1 | type I toxin-antitoxin system toxin HokD | - |
| RG38_RS25495 () | 50895..51887 | - | 993 | WP_000944483.1 | MazG-like family protein | - |
| RG38_RS25500 () | 52185..52694 | - | 510 | WP_000509939.1 | hypothetical protein | - |
| RG38_RS25505 () | 52706..53287 | - | 582 | WP_000035301.1 | hypothetical protein | - |
| RG38_RS25510 () | 53323..54138 | - | 816 | WP_024236438.1 | hypothetical protein | - |
| RG38_RS25515 () | 54148..55737 | - | 1590 | WP_050858685.1 | hypothetical protein | - |
| RG38_RS25520 () | 55798..57504 | - | 1707 | WP_000067710.1 | hypothetical protein | - |
| RG38_RS25525 () | 57771..58736 | - | 966 | WP_050858684.1 | ParB/RepB/Spo0J family partition protein | - |
| RG38_RS25530 () | 58733..59938 | - | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| RG38_RS25540 () | 60338..61198 | - | 861 | WP_001076427.1 | replication protein RepA | - |
| RG38_RS25545 () | 61517..61909 | - | 393 | WP_001281125.1 | hypothetical protein | - |
| RG38_RS25550 () | 62087..62509 | - | 423 | WP_000007769.1 | hypothetical protein | - |
| RG38_RS25555 () | 62549..63337 | - | 789 | WP_050858683.1 | hypothetical protein | - |
| RG38_RS25565 () | 63800..64084 | + | 285 | WP_001177860.1 | hypothetical protein | - |
| RG38_RS25570 () | 64077..64982 | + | 906 | WP_050858682.1 | recombination-associated protein RdgC | - |
| RG38_RS25580 () | 65189..68266 | + | 3078 | WP_050858680.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| RG38_RS25605 () | 69827..70261 | + | 435 | WP_000467133.1 | tellurite resistance TerB family protein | - |
| RG38_RS27865 () | 70261..70425 | + | 165 | WP_166512916.1 | DUF3927 family protein | - |
| RG38_RS25615 () | 70898..72262 | + | 1365 | WP_001276605.1 | replicative DNA helicase | - |
| RG38_RS25620 () | 72262..72564 | + | 303 | WP_001189128.1 | hypothetical protein | - |
| RG38_RS25625 () | 72561..73535 | + | 975 | WP_050858716.1 | hypothetical protein | - |
| RG38_RS25630 () | 73582..74214 | - | 633 | WP_000535202.1 | baseplate protein | - |
| RG38_RS25635 () | 74207..75223 | - | 1017 | WP_050858715.1 | hypothetical protein | - |
| RG38_RS25640 () | 75225..76010 | - | 786 | WP_000602717.1 | hypothetical protein | - |
| RG38_RS25645 () | 75997..76725 | - | 729 | WP_000896801.1 | hypothetical protein | - |
| RG38_RS25650 () | 76729..77946 | - | 1218 | WP_001141908.1 | hypothetical protein | - |
| RG38_RS25655 () | 77956..78333 | - | 378 | WP_000235786.1 | hypothetical protein | - |
| RG38_RS25660 () | 78480..78725 | + | 246 | WP_000840930.1 | hypothetical protein | - |
| RG38_RS25665 () | 78728..79306 | + | 579 | WP_050858714.1 | VRR-NUC domain-containing protein | - |
| RG38_RS25670 () | 79373..79528 | + | 156 | WP_000095381.1 | hypothetical protein | - |
| RG38_RS25680 () | 80030..80656 | + | 627 | WP_000484110.1 | norphogenetic protein | - |
| RG38_RS25685 () | 80653..81216 | + | 564 | Protein_89 | metallophosphoesterase | - |
| RG38_RS25690 () | 81245..82996 | - | 1752 | Protein_90 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| RG38_RS25695 () | 82985..83392 | + | 408 | WP_001214976.1 | cysteine hydrolase | - |
| RG38_RS25700 () | 83530..84414 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| RG38_RS25705 () | 84446..85645 | - | 1200 | WP_001493765.1 | Tetracycline resistance protein, class C | ARG |
| RG38_RS25710 () | 85751..86401 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| RG38_RS25715 () | 86641..87345 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG38_RS25720 () | 87463..87666 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| RG38_RS25730 () | 87794..88633 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| RG38_RS25735 () | 88627..88833 | - | 207 | Protein_98 | QacE family quaternary ammonium compound efflux SMR transporter | - |
| RG38_RS25740 () | 88814..88978 | + | 165 | WP_072644484.1 | cupin domain-containing protein | - |
| RG38_RS25745 () | 89003..90301 | - | 1299 | Protein_100 | Tn3 family transposase TnpA_Tn3 | Transposase |
| RG38_RS25750 () | 90369..91073 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG38_RS27690 () | 91129..91263 | - | 135 | Protein_102 | IS6 family transposase IS15DI | Transposase |
| RG38_RS25760 () | 91328..91642 | + | 315 | Protein_103 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| RG38_RS25765 () | 91645..94596 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| RG38_RS25770 () | 94605..95006 | + | 402 | WP_046788546.1 | hypothetical protein | - |
| RG38_RS25775 () | 95091..95795 | - | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| RG38_RS25780 () | 95859..96689 | + | 831 | Protein_107 | IS91 family transposase ISVsa3 | Transposase |
| RG38_RS28025 () | 97158..97604 | + | 447 | Protein_108 | DUF3363 domain-containing protein | - |
| RG38_RS25790 () | 97821..99035 | + | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| RG38_RS25795 () | 99063..99368 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| RG38_RS25800 () | 99480..100973 | + | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| RG38_RS25810 () | 101209..101451 | - | 243 | Protein_112 | phosphoglucosamine mutase | - |
| RG38_RS25815 () | 101538..102353 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| RG38_RS27155 () | 102443..103533 | + | 1091 | WP_085940648.1 | IS4-like element ISAba1 family transposase | - |
| RG38_RS25840 () | 103730..104215 | - | 486 | WP_006581703.1 | hypothetical protein | - |
| RG38_RS25845 () | 104253..104405 | - | 153 | Protein_116 | phenol hydroxylase | - |
| RG38_RS25850 () | 104441..105940 | - | 1500 | Protein_117 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| RG38_RS25855 () | 106026..106778 | + | 753 | WP_073511589.1 | IS6 family transposase ISRle7 | Transposase |
| RG38_RS27160 () | 106829..107194 | - | 366 | Protein_119 | AAC(3) family N-acetyltransferase | - |
| RG38_RS25865 () | 107200..108225 | - | 1026 | WP_000742814.1 | Hygromycin-B 4-O-kinase | ARG |
| RG38_RS25875 () | 108454..109230 | - | 777 | WP_001199192.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| RG38_RS25880 () | 109344..109490 | + | 147 | Protein_122 | IS6 family transposase | - |
| RG38_RS25890 () | 109902..110915 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| RG38_RS25895 () | 111073..111546 | + | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| RG38_RS25900 () | 111677..112255 | + | 579 | Protein_125 | DUF4111 domain-containing protein | - |
| RG38_RS25910 () | 112308..112874 | - | 567 | Protein_126 | IS6 family transposase IS26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|