MGE detailed information
MGE type: Conjugative plasmid MGE length: 39580 bp
Accession: NZ_CP009827 Location: 1..39580 Organism: Xylella fastidiosa strain Pr8x Replicon: plasmid pXF39
Accession: NZ_CP009827 Location: 1..39580 Organism: Xylella fastidiosa strain Pr8x Replicon: plasmid pXF39
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFPR_RS12005 () | 43..297 | + | 255 | WP_023908200.1 | helix-turn-helix domain-containing protein | - |
| XFPR_RS12010 () | 431..1006 | + | 576 | WP_010895199.1 | lytic transglycosylase domain-containing protein | - |
| XFPR_RS12015 () | 1008..2996 | + | 1989 | WP_023908201.1 | type I DNA topoisomerase | - |
| XFPR_RS12020 () | 3067..3330 | + | 264 | WP_023908202.1 | hypothetical protein | - |
| XFPR_RS12025 () | 3439..3711 | + | 273 | WP_038227696.1 | TrbC/VirB2 family protein | - |
| XFPR_RS12030 () | 3714..4082 | + | 369 | WP_023908204.1 | type IV secretion system protein VirB3 | - |
| XFPR_RS12035 () | 4096..6543 | + | 2448 | WP_023908205.1 | VirB4 family type IV secretion system protein | - |
| XFPR_RS12040 () | 6540..7220 | + | 681 | WP_023908206.1 | P-type DNA transfer protein VirB5 | - |
| XFPR_RS12045 () | 7272..7520 | + | 249 | WP_023908207.1 | hypothetical protein | - |
| XFPR_RS12050 () | 7562..7810 | + | 249 | WP_023908208.1 | hypothetical protein | - |
| XFPR_RS12055 () | 7814..8860 | + | 1047 | WP_023908209.1 | type IV secretion system protein | - |
| XFPR_RS12060 () | 9170..9991 | + | 822 | WP_023908210.1 | virB8 family protein | - |
| XFPR_RS12065 () | 10002..10838 | + | 837 | WP_010895210.1 | P-type conjugative transfer protein VirB9 | - |
| XFPR_RS12070 () | 10838..12181 | + | 1344 | WP_023908211.1 | type IV secretion system protein VirB10 | - |
| XFPR_RS12075 () | 12166..13209 | + | 1044 | WP_023908212.1 | P-type DNA transfer ATPase VirB11 | - |
| XFPR_RS12080 () | 13214..15202 | + | 1989 | WP_023908213.1 | type IV secretory system conjugative DNA transfer family protein | - |
| XFPR_RS12085 () | 15213..17483 | + | 2271 | WP_023908214.1 | hypothetical protein | - |
| XFPR_RS12090 () | 17480..17677 | + | 198 | WP_023908215.1 | hypothetical protein | - |
| XFPR_RS12095 () | 17837..17989 | - | 153 | WP_088572720.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| XFPR_RS12100 () | 18063..18305 | + | 243 | WP_051372742.1 | hypothetical protein | - |
| XFPR_RS12105 () | 18362..18679 | + | 318 | WP_143704198.1 | hypothetical protein | - |
| XFPR_RS12110 () | 18665..19222 | - | 558 | WP_031337221.1 | recombinase family protein | - |
| XFPR_RS12115 () | 19281..19583 | - | 303 | WP_023908220.1 | hypothetical protein | - |
| XFPR_RS12120 () | 19734..20153 | - | 420 | WP_023908221.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| XFPR_RS12125 () | 20153..20392 | - | 240 | WP_023908222.1 | ribbon-helix-helix domain-containing protein | - |
| XFPR_RS12130 () | 20825..21145 | + | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XFPR_RS12135 () | 21275..21601 | + | 327 | WP_004091396.1 | DNA-binding protein | - |
| XFPR_RS12140 () | 21915..22187 | + | 273 | WP_023908223.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| XFPR_RS12145 () | 22184..22669 | + | 486 | WP_023908224.1 | GNAT family N-acetyltransferase | Toxin Detail |
| XFPR_RS12150 () | 22663..23154 | + | 492 | WP_051372743.1 | thermonuclease family protein | - |
| XFPR_RS12155 () | 24054..25445 | - | 1392 | WP_075584705.1 | relaxase/mobilization nuclease domain-containing protein | - |
| XFPR_RS12160 () | 25430..25996 | - | 567 | WP_075584706.1 | plasmid mobilization relaxosome protein MobC | - |
| XFPR_RS12165 () | 26197..26586 | + | 390 | WP_023908230.1 | hypothetical protein | - |
| XFPR_RS12170 () | 26583..27290 | + | 708 | WP_023908231.1 | hypothetical protein | - |
| XFPR_RS12175 () | 27334..27774 | + | 441 | WP_088572721.1 | hypothetical protein | - |
| XFPR_RS12180 () | 27778..28227 | + | 450 | WP_031337230.1 | virulence factor | - |
| XFPR_RS12185 () | 28240..28608 | - | 369 | WP_023908234.1 | hypothetical protein | - |
| XFPR_RS12190 () | 29055..29639 | - | 585 | WP_023908236.1 | hypothetical protein | - |
| XFPR_RS12195 () | 29727..30575 | - | 849 | WP_081378033.1 | DUF4942 domain-containing protein | - |
| XFPR_RS12200 () | 31366..31614 | - | 249 | WP_196432213.1 | transcriptional regulator | - |
| XFPR_RS12205 () | 31623..32162 | - | 540 | WP_075584708.1 | hypothetical protein | - |
| XFPR_RS12210 () | 32137..33342 | - | 1206 | WP_023908241.1 | ParB/RepB/Spo0J family partition protein | - |
| XFPR_RS12215 () | 33339..34103 | - | 765 | WP_010895252.1 | ParA family protein | - |
| XFPR_RS12220 () | 34264..34674 | - | 411 | WP_023908242.1 | single-stranded DNA-binding protein | - |
| XFPR_RS12225 () | 34748..35539 | - | 792 | WP_031337233.1 | DUF3560 domain-containing protein | - |
| XFPR_RS12230 () | 35880..36230 | + | 351 | WP_031337234.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XFPR_RS12235 () | 36227..36550 | + | 324 | WP_023908245.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| XFPR_RS12240 () | 36558..36965 | - | 408 | WP_023908246.1 | hypothetical protein | - |
| XFPR_RS12245 () | 37028..37363 | - | 336 | WP_023908247.1 | helix-turn-helix domain-containing protein | - |
| XFPR_RS12250 () | 37344..37721 | - | 378 | WP_023908248.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XFPR_RS12255 () | 38557..39333 | - | 777 | WP_023908250.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|