MGE detailed information
MGE type: Conjugative plasmid MGE length: 51180 bp
Accession: NZ_CP009825 Location: 1..51180 Organism: Xylella fastidiosa strain J1a12 Replicon: plasmid pXF51-J1
Accession: NZ_CP009825 Location: 1..51180 Organism: Xylella fastidiosa strain J1a12 Replicon: plasmid pXF51-J1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OY18_RS13880 (OY18_13075) | 47..301 | + | 255 | WP_042464021.1 | helix-turn-helix transcriptional regulator | - |
| OY18_RS13885 (OY18_13080) | 435..1010 | + | 576 | WP_010895199.1 | Type IV secretion system protein virB1 | VF |
| OY18_RS13890 (OY18_13085) | 1012..2994 | + | 1983 | WP_010895200.1 | type I DNA topoisomerase | - |
| OY18_RS14595 | 3065..3229 | + | 165 | WP_157291841.1 | hypothetical protein | - |
| OY18_RS13895 (OY18_13090) | 3354..3710 | + | 357 | WP_069106970.1 | TrbC/VirB2 family protein | - |
| OY18_RS13900 (OY18_13095) | 3713..4081 | + | 369 | WP_010895203.1 | Type IV secretion system protein virB3 | VF |
| OY18_RS13905 (OY18_13100) | 4095..6542 | + | 2448 | WP_010895204.1 | Type IV secretion system protein virB4 | VF |
| OY18_RS13910 (OY18_13105) | 6539..7219 | + | 681 | WP_010895205.1 | Type IV secretion system protein virB5 | VF |
| OY18_RS13920 (OY18_13115) | 7796..8842 | + | 1047 | WP_010895208.1 | type IV secretion system protein | - |
| OY18_RS13930 (OY18_13120) | 9152..9973 | + | 822 | WP_010895209.1 | Type IV secretion system protein virB8 | VF |
| OY18_RS13935 (OY18_13125) | 10141..10821 | + | 681 | WP_229926375.1 | Type IV secretion system protein virB9 | VF |
| OY18_RS13940 (OY18_13130) | 10821..12164 | + | 1344 | WP_010895211.1 | Type IV secretion system protein virB10 | VF |
| OY18_RS13945 (OY18_13135) | 12161..13192 | + | 1032 | WP_042464027.1 | Type IV secretion system protein VirB11 | VF |
| OY18_RS15450 | 13158..13859 | + | 702 | WP_268233942.1 | Protein VirD4 | VF |
| OY18_RS13950 (OY18_13140) | 13817..15169 | + | 1353 | WP_268233943.1 | Protein VirD4 | VF |
| OY18_RS13955 (OY18_13145) | 15180..17471 | + | 2292 | WP_010895214.1 | hypothetical protein | - |
| OY18_RS13960 (OY18_13150) | 17468..17665 | + | 198 | WP_042464033.1 | hypothetical protein | - |
| OY18_RS13965 (OY18_13155) | 17662..17988 | + | 327 | WP_010895215.1 | hypothetical protein | - |
| OY18_RS13975 (OY18_13165) | 18348..18905 | - | 558 | WP_042464084.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| OY18_RS13980 (OY18_13170) | 18964..19266 | - | 303 | WP_010895217.1 | hypothetical protein | - |
| OY18_RS13985 (OY18_13175) | 19417..19836 | - | 420 | WP_010895219.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| OY18_RS13990 (OY18_13180) | 19836..20075 | - | 240 | WP_004085761.1 | ribbon-helix-helix domain-containing protein | - |
| OY18_RS13995 (OY18_13185) | 20471..20743 | + | 273 | WP_010895220.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| OY18_RS14000 (OY18_13190) | 20740..21225 | + | 486 | WP_010895221.1 | GNAT family N-acetyltransferase | Toxin Detail |
| OY18_RS14005 (OY18_13195) | 21709..21972 | - | 264 | WP_088569753.1 | DUF4190 domain-containing protein | - |
| OY18_RS14010 (OY18_13200) | 22037..22363 | - | 327 | WP_010895223.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| OY18_RS14015 (OY18_13205) | 22350..22580 | - | 231 | WP_042464041.1 | hypothetical protein | - |
| OY18_RS14020 (OY18_13210) | 22860..23141 | - | 282 | WP_088569754.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OY18_RS14025 (OY18_13215) | 23150..23317 | - | 168 | WP_042464043.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OY18_RS14030 (OY18_13220) | 23305..23558 | - | 254 | Protein_29 | CopG family ribbon-helix-helix protein | - |
| OY18_RS14035 (OY18_13225) | 23818..24837 | - | 1020 | WP_010895227.1 | hypothetical protein | - |
| OY18_RS14040 (OY18_13230) | 25198..25954 | - | 757 | Protein_31 | alpha/beta hydrolase | - |
| OY18_RS14045 (OY18_13235) | 26124..26246 | - | 123 | Protein_32 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| OY18_RS14050 (OY18_13240) | 26357..26743 | + | 387 | WP_042464090.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| OY18_RS14055 (OY18_13245) | 26724..27059 | + | 336 | WP_023908247.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| OY18_RS14060 (OY18_13250) | 27214..27813 | - | 600 | WP_010895232.1 | hypothetical protein | VF |
| OY18_RS15330 | 27819..28115 | - | 297 | WP_229926373.1 | conjugal transfer protein | - |
| OY18_RS14065 (OY18_13255) | 28123..29232 | - | 1110 | WP_229926374.1 | P-type conjugative transfer protein TrbL | - |
| OY18_RS14070 (OY18_13260) | 29236..29472 | - | 237 | WP_010894503.1 | EexN family lipoprotein | - |
| OY18_RS14075 (OY18_13265) | 29489..30262 | - | 774 | WP_042464049.1 | P-type conjugative transfer protein TrbJ | - |
| OY18_RS14080 (OY18_13270) | 30281..31687 | - | 1407 | WP_088569755.1 | TrbI/VirB10 family protein | - |
| OY18_RS14085 (OY18_13275) | 31693..32169 | - | 477 | WP_010895235.1 | conjugal transfer protein TrbH | - |
| OY18_RS14090 (OY18_13280) | 32172..33062 | - | 891 | WP_088569756.1 | P-type conjugative transfer protein TrbG | - |
| OY18_RS14095 (OY18_13285) | 33079..33795 | - | 717 | WP_088569757.1 | conjugal transfer protein TrbF | - |
| OY18_RS14100 (OY18_13290) | 33792..36147 | - | 2356 | Protein_44 | conjugal transfer protein TrbE | - |
| OY18_RS14105 (OY18_13295) | 36289..36609 | + | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OY18_RS14110 (OY18_13300) | 36740..37066 | + | 327 | WP_010895238.1 | DNA-binding protein | - |
| OY18_RS14120 | 37608..38984 | - | 1377 | WP_052262879.1 | T-DNA border endonuclease VirD2 | Relaxase |
| OY18_RS14125 (OY18_13315) | 38984..39559 | - | 576 | WP_010895240.1 | hypothetical protein | Relaxase |
| OY18_RS14130 (OY18_13320) | 39759..40025 | + | 267 | WP_088569759.1 | hypothetical protein | - |
| OY18_RS14135 (OY18_13325) | 40146..40853 | + | 708 | WP_010895242.1 | StbB family protein | - |
| OY18_RS14140 (OY18_13330) | 40863..41336 | + | 474 | WP_010895243.1 | hypothetical protein | - |
| OY18_RS14145 (OY18_13335) | 41340..41792 | + | 453 | WP_042464096.1 | virulence factor | - |
| OY18_RS14150 (OY18_13340) | 42028..42396 | - | 369 | WP_042464065.1 | hypothetical protein | - |
| OY18_RS14155 (OY18_13345) | 42633..43217 | - | 585 | WP_010895246.1 | hypothetical protein | - |
| OY18_RS14160 (OY18_13350) | 43305..44141 | - | 837 | WP_042464068.1 | DUF4942 domain-containing protein | - |
| OY18_RS14170 (OY18_13355) | 44957..45187 | - | 231 | WP_157291842.1 | TrfB-related DNA-binding protein | - |
| OY18_RS14175 (OY18_13360) | 45214..45663 | - | 450 | WP_042464071.1 | hypothetical protein | - |
| OY18_RS14180 (OY18_13365) | 45728..46933 | - | 1206 | WP_010895251.1 | ParB/RepB/Spo0J family partition protein | - |
| OY18_RS14185 (OY18_13370) | 46930..47694 | - | 765 | WP_010895252.1 | ParA family protein | - |
| OY18_RS14190 (OY18_13375) | 47857..48267 | - | 411 | WP_010895253.1 | single-stranded DNA-binding protein | - |
| OY18_RS14195 (OY18_13380) | 48341..49132 | - | 792 | WP_042464099.1 | DUF3560 domain-containing protein | - |
| OY18_RS14205 (OY18_13385) | 50161..50859 | - | 699 | WP_155115012.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|