MGE detailed information
MGE type: Conjugative plasmid MGE length: 27268 bp
Accession: NZ_CP009824 Location: 1..27268 Organism: Xylella fastidiosa strain J1a12 Replicon: plasmid pXF27-J1
Accession: NZ_CP009824 Location: 1..27268 Organism: Xylella fastidiosa strain J1a12 Replicon: plasmid pXF27-J1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OY18_RS13695 (OY18_12900) | 18..1121 | - | 1104 | WP_081089762.1 | replication protein RepA | - |
| OY18_RS13700 (OY18_12905) | 1148..1751 | - | 604 | Protein_1 | Tn3 family transposase TnBth3 | Transposase |
| OY18_RS13705 (OY18_12910) | 1973..2203 | + | 231 | WP_042464041.1 | hypothetical protein | - |
| OY18_RS13710 (OY18_12915) | 2190..2516 | + | 327 | WP_060872373.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| OY18_RS13715 (OY18_12920) | 2656..2886 | + | 231 | WP_060871665.1 | DUF6290 family protein | Antitoxin Detail |
| OY18_RS13720 (OY18_12925) | 2870..3139 | + | 270 | WP_060871666.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| OY18_RS13725 (OY18_12930) | 3188..3469 | - | 282 | WP_229926367.1 | hypothetical protein | - |
| OY18_RS15320 | 3438..3602 | - | 165 | WP_229926368.1 | hypothetical protein | - |
| OY18_RS13735 (OY18_12940) | 4453..4632 | + | 180 | WP_081089764.1 | hypothetical protein | - |
| OY18_RS13740 (OY18_12945) | 4720..5115 | + | 396 | WP_229926369.1 | hypothetical protein | - |
| OY18_RS13745 (OY18_12950) | 5118..5438 | + | 321 | WP_060871671.1 | TrbC/VirB2 family protein | - |
| OY18_RS13750 (OY18_12955) | 5443..5826 | + | 384 | WP_013087959.1 | VirB3 family type IV secretion system protein | - |
| OY18_RS13755 (OY18_12960) | 5789..8200 | + | 2412 | WP_060871672.1 | Type IV secretion system protein virB4 | VF |
| OY18_RS13760 (OY18_12965) | 8203..8868 | + | 666 | WP_060871673.1 | Type IV secretion system protein virB5 | VF |
| OY18_RS13770 (OY18_12970) | 9138..10121 | + | 984 | WP_060871674.1 | type IV secretion system protein | - |
| OY18_RS13775 (OY18_12975) | 10125..10592 | + | 468 | WP_268233940.1 | Type IV secretion system protein PtlE | VF |
| OY18_RS15445 | 10607..10798 | + | 192 | WP_268233941.1 | type IV secretion system protein | - |
| OY18_RS13780 (OY18_12980) | 10835..11614 | + | 780 | WP_060871675.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| OY18_RS15325 | 11617..11838 | + | 222 | WP_229926370.1 | hypothetical protein | - |
| OY18_RS13785 | 11822..12937 | + | 1116 | WP_229926371.1 | Type IV secretion system protein virB10 | VF |
| OY18_RS13795 (OY18_12995) | 12915..16232 | + | 3318 | WP_229926372.1 | Type IV secretion system protein VirB11 | VF |
| OY18_RS13800 (OY18_13000) | 16245..17351 | + | 1107 | WP_060871679.1 | hypothetical protein | - |
| OY18_RS13805 (OY18_13005) | 17417..17752 | + | 336 | WP_060871680.1 | FxLYD domain-containing protein | - |
| OY18_RS13810 (OY18_13010) | 17812..18444 | - | 633 | WP_229926363.1 | hypothetical protein | - |
| OY18_RS14790 | 18398..18613 | - | 216 | WP_173406029.1 | hypothetical protein | - |
| OY18_RS13815 (OY18_13015) | 18653..19789 | + | 1137 | WP_229926364.1 | T-DNA border endonuclease VirD2 | Relaxase |
| OY18_RS13820 (OY18_13020) | 19880..21037 | - | 1158 | WP_060871686.1 | IS200-IS605 family transposase IS609 | Transposase |
| OY18_RS13825 (OY18_13025) | 21060..21476 | + | 417 | WP_060871682.1 | IS200-IS605 family transposase IS609 | Transposase |
| OY18_RS13830 (OY18_13030) | 21596..21922 | - | 327 | WP_060870251.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| OY18_RS13835 (OY18_13035) | 21919..22182 | - | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| OY18_RS13840 (OY18_13040) | 22239..23339 | - | 1101 | WP_060870252.1 | zeta toxin family protein | - |
| OY18_RS13845 (OY18_13045) | 23345..23599 | - | 255 | WP_060870253.1 | hypothetical protein | - |
| OY18_RS13850 (OY18_13050) | 23618..24196 | - | 579 | WP_229926365.1 | hypothetical protein | Relaxase |
| OY18_RS13855 (OY18_13055) | 24608..24868 | + | 261 | WP_229926366.1 | hypothetical protein | - |
| OY18_RS13860 (OY18_13060) | 24881..25633 | + | 753 | WP_013087971.1 | hypothetical protein | - |
| OY18_RS13865 (OY18_13065) | 25634..26077 | + | 444 | WP_060870257.1 | hypothetical protein | - |
| OY18_RS13870 (OY18_13070) | 26182..26508 | - | 327 | WP_060870258.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| OY18_RS13875 | 26505..26729 | - | 225 | WP_060870259.1 | antitoxin MazE family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|