MGE detailed information
MGE type: Prophage MGE length: 66038 bp
Accession: NZ_CP009790 Location: 650664..716701 Organism: Xylella fastidiosa strain U24d Replicon: chromosome
Accession: NZ_CP009790 Location: 650664..716701 Organism: Xylella fastidiosa strain U24d Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFUD_RS03045 () | 646640..647692 | + | 1053 | WP_010893199.1 | endolytic transglycosylase MltG | - |
| XFUD_RS03050 () | 647722..648681 | + | 960 | WP_010893200.1 | DNA polymerase III subunit delta' | - |
| XFUD_RS03055 () | 648681..649034 | + | 354 | WP_004083467.1 | PilZ domain-containing protein | - |
| XFUD_RS03065 () | 649222..649749 | - | 528 | Protein_540 | site-specific integrase | - |
| XFUD_RS03070 () | 650121..650444 | - | 324 | WP_042463587.1 | helix-turn-helix domain-containing protein | - |
| XFUD_RS03075 () | 650431..650667 | - | 237 | WP_010893203.1 | hypothetical protein | - |
| XFUD_RS03080 () | 650664..652082 | - | 1419 | WP_010893204.1 | DEAD/DEAH box helicase | - |
| XFUD_RS03085 () | 652146..652574 | + | 429 | WP_042462867.1 | hypothetical protein | - |
| XFUD_RS03090 () | 652576..652854 | - | 279 | WP_010893206.1 | VRR-NUC domain-containing protein | - |
| XFUD_RS03095 () | 652851..655031 | - | 2181 | WP_010893207.1 | DNA polymerase | - |
| XFUD_RS03100 () | 655033..656544 | - | 1512 | WP_010893208.1 | hypothetical protein | - |
| XFUD_RS03105 () | 656617..657183 | - | 567 | WP_010893209.1 | DUF2815 family protein | - |
| XFUD_RS03110 () | 657183..658460 | - | 1278 | WP_010893210.1 | DUF2800 domain-containing protein | - |
| XFUD_RS13350 () | 658457..658954 | - | 498 | WP_155114982.1 | hypothetical protein | - |
| XFUD_RS03120 () | 658954..659145 | - | 192 | WP_010893212.1 | hypothetical protein | - |
| XFUD_RS03125 () | 659142..659414 | - | 273 | WP_010893213.1 | hypothetical protein | - |
| XFUD_RS03130 () | 659446..659640 | - | 195 | WP_010893214.1 | hypothetical protein | - |
| XFUD_RS03135 () | 659637..660038 | - | 402 | WP_010893215.1 | hypothetical protein | - |
| XFUD_RS03140 () | 660038..660427 | - | 390 | WP_010893216.1 | hypothetical protein | - |
| XFUD_RS03145 () | 660424..660981 | - | 558 | WP_010893217.1 | hypothetical protein | - |
| XFUD_RS13355 () | 661328..661531 | + | 204 | WP_155114983.1 | hypothetical protein | - |
| XFUD_RS03155 () | 661706..662443 | - | 738 | WP_155114984.1 | helix-turn-helix transcriptional regulator | - |
| XFUD_RS03160 () | 662436..662660 | + | 225 | WP_010893221.1 | hypothetical protein | - |
| XFUD_RS13360 () | 662834..663325 | - | 492 | WP_023907743.1 | hypothetical protein | - |
| XFUD_RS13365 () | 663367..663672 | - | 306 | WP_023907741.1 | hypothetical protein | - |
| XFUD_RS03180 () | 663800..663988 | + | 189 | WP_042462880.1 | hypothetical protein | - |
| XFUD_RS03185 () | 663985..664233 | + | 249 | WP_010893226.1 | hypothetical protein | - |
| XFUD_RS13790 () | 664303..664533 | - | 231 | Protein_564 | hypothetical protein | - |
| XFUD_RS03200 () | 664849..665481 | + | 633 | WP_010893228.1 | Bro-N domain-containing protein | - |
| XFUD_RS03205 () | 665618..668152 | + | 2535 | WP_042462886.1 | DNA primase | - |
| XFUD_RS03210 () | 668695..668892 | + | 198 | WP_010893230.1 | hypothetical protein | - |
| XFUD_RS03215 () | 669085..669702 | + | 618 | WP_042463593.1 | hypothetical protein | - |
| XFUD_RS03220 () | 669669..670163 | + | 495 | WP_010893231.1 | lysozyme | - |
| XFUD_RS03225 () | 670156..670485 | + | 330 | WP_031338054.1 | phage holin family protein | - |
| XFUD_RS03230 () | 670475..670936 | + | 462 | WP_042462889.1 | hypothetical protein | - |
| XFUD_RS03235 () | 670938..671162 | + | 225 | WP_042462892.1 | hypothetical protein | - |
| XFUD_RS03240 () | 671293..671874 | + | 582 | WP_010893234.1 | terminase small subunit | - |
| XFUD_RS03245 () | 671867..673819 | + | 1953 | WP_042462898.1 | phage terminase large subunit family protein | - |
| XFUD_RS03250 () | 673823..674371 | + | 549 | WP_010893236.1 | hypothetical protein | - |
| XFUD_RS03255 () | 674368..675966 | + | 1599 | WP_010893237.1 | phage portal protein | - |
| XFUD_RS03260 () | 675950..677830 | + | 1881 | WP_010893238.1 | phage major capsid protein | - |
| XFUD_RS03265 () | 677848..678108 | + | 261 | WP_010893239.1 | hypothetical protein | - |
| XFUD_RS03270 () | 678108..678431 | + | 324 | WP_042462902.1 | hypothetical protein | - |
| XFUD_RS03275 () | 678428..678949 | + | 522 | WP_010893241.1 | hypothetical protein | - |
| XFUD_RS03280 () | 678925..679467 | + | 543 | WP_042462905.1 | hypothetical protein | - |
| XFUD_RS03285 () | 679464..680051 | + | 588 | WP_010893243.1 | phage baseplate assembly protein V | - |
| XFUD_RS03290 () | 680056..680331 | - | 276 | WP_010893244.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| XFUD_RS03295 () | 680342..680623 | - | 282 | WP_042463596.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XFUD_RS03300 () | 680831..681169 | + | 339 | WP_042462908.1 | GPW/gp25 family protein | - |
| XFUD_RS03305 () | 681169..682062 | + | 894 | WP_010893248.1 | baseplate J/gp47 family protein | - |
| XFUD_RS03310 () | 682055..682612 | + | 558 | WP_010893249.1 | phage tail protein I | - |
| XFUD_RS03315 () | 682620..684212 | + | 1593 | WP_010894924.1 | tail fiber domain-containing protein | - |
| XFUD_RS03320 () | 684277..685455 | + | 1179 | WP_042462912.1 | phage tail sheath family protein | - |
| XFUD_RS03325 () | 685455..685964 | + | 510 | WP_010893252.1 | phage major tail tube protein | - |
| XFUD_RS03330 () | 685967..686254 | + | 288 | WP_010893253.1 | phage tail assembly protein | - |
| XFUD_RS03335 () | 686381..688600 | + | 2220 | WP_010893254.1 | phage tail tape measure protein | - |
| XFUD_RS03340 () | 688597..689079 | + | 483 | WP_010893255.1 | phage tail protein | - |
| XFUD_RS03345 () | 689076..689294 | + | 219 | WP_010893256.1 | tail protein X | - |
| XFUD_RS03350 () | 689285..690367 | + | 1083 | WP_010893257.1 | phage late control D family protein | - |
| XFUD_RS03360 () | 691459..693366 | + | 1908 | WP_010893260.1 | threonine--tRNA ligase | - |
| XFUD_RS03365 () | 693434..693961 | + | 528 | WP_075584689.1 | translation initiation factor IF-3 | - |
| XFUD_RS03370 () | 694221..694418 | + | 198 | WP_004090402.1 | 50S ribosomal protein L35 | - |
| XFUD_RS03375 () | 694429..694788 | + | 360 | WP_010893263.1 | 50S ribosomal protein L20 | - |
| XFUD_RS03380 () | 695060..696061 | + | 1002 | WP_010893264.1 | phenylalanine--tRNA ligase subunit alpha | - |
| XFUD_RS03385 () | 696145..698523 | + | 2379 | WP_010893265.1 | phenylalanine--tRNA ligase subunit beta | - |
| XFUD_RS03390 () | 698547..698846 | + | 300 | WP_010893266.1 | integration host factor subunit alpha | - |
| XFUD_RS03395 () | 698827..699183 | + | 357 | WP_031337099.1 | MerR family transcriptional regulator | - |
| XFUD_RS13670 () | 699751..699894 | - | 144 | WP_023908099.1 | hypothetical protein | - |
| XFUD_RS03410 () | 700878..701933 | + | 1056 | WP_010893271.1 | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM | - |
| XFUD_RS03415 () | 702719..703123 | - | 405 | WP_010893272.1 | H-NS histone family protein | - |
| XFUD_RS03420 () | 703402..704490 | - | 1089 | WP_010893274.1 | ribonuclease D | - |
| XFUD_RS03425 () | 704613..706415 | + | 1803 | WP_038200859.1 | Serine/threonine-protein kinase pkn1 | VF |
| XFUD_RS03430 () | 706541..707398 | + | 858 | WP_010893277.1 | virulence factor family protein | - |
| XFUD_RS03435 () | 707464..708798 | - | 1335 | WP_010893278.1 | exodeoxyribonuclease VII large subunit | - |
| XFUD_RS03440 () | 709248..710738 | + | 1491 | WP_010893280.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| XFUD_RS03445 () | 710735..711223 | + | 489 | WP_010893281.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| XFUD_RS03450 () | 711282..712900 | + | 1619 | Protein_613 | N-acetylmuramoyl-L-alanine amidase | - |
| XFUD_RS03455 () | 713036..714895 | + | 1860 | WP_010893283.1 | DNA mismatch repair endonuclease MutL | - |
| XFUD_RS03460 () | 714895..715857 | + | 963 | WP_023906990.1 | DUF1684 domain-containing protein | - |
| XFUD_RS03465 () | 716126..716701 | - | 576 | WP_010893285.1 | dCTP deaminase | - |
| XFUD_RS03470 () | 717274..718059 | - | 786 | WP_031338049.1 | sulfite exporter TauE/SafE family protein | - |
| XFUD_RS03475 () | 718056..718496 | - | 441 | WP_010893288.1 | YeeE/YedE family protein | - |
| XFUD_RS03480 () | 718493..718900 | - | 408 | WP_010893289.1 | YeeE/YedE family protein | - |
| XFUD_RS03485 () | 718897..719241 | - | 345 | WP_010893290.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| XFUD_RS03490 () | 719235..720530 | - | 1296 | WP_010893291.1 | TIGR01244 family phosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa 9a5c | Prophage | TA20276 | NC_002488 | 650674..716711 | 0 |