MGE detailed information
MGE type: Prophage MGE length: 23045 bp
Accession: NZ_CP009789 Location: 1611431..1634475 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Accession: NZ_CP009789 Location: 1611431..1634475 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER3413_RS07965 () | 1607946..1608692 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| ER3413_RS07970 () | 1608781..1609467 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| ER3413_RS07975 () | 1609644..1609847 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ER3413_RS07980 () | 1609882..1611342 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ER3413_RS07985 () | 1611431..1612798 | - | 1368 | Protein_1517 | MHS family MFS transporter | - |
| ER3413_RS25295 () | 1613319..1613432 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| ER3413_RS07990 () | 1613501..1613734 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| ER3413_RS07995 () | 1614051..1614641 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ER3413_RS08000 () | 1614739..1615314 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ER3413_RS08005 () | 1615314..1616276 | - | 963 | WP_001027733.1 | phage tail protein | - |
| ER3413_RS08010 () | 1616227..1616796 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ER3413_RS08015 () | 1617185..1617418 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ER3413_RS08020 () | 1617462..1618670 | - | 1209 | WP_006250222.1 | IS4 family transposase IS10R | Transposase |
| ER3413_RS08025 () | 1618814..1619224 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ER3413_RS08030 () | 1619376..1619549 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ER3413_RS08035 () | 1619721..1619876 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| ER3413_RS25305 () | 1619955..1620020 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| ER3413_RS23480 () | 1620023..1620211 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| ER3413_RS08040 () | 1620222..1620434 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ER3413_RS08045 () | 1620797..1621294 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ER3413_RS08050 () | 1621291..1621824 | - | 534 | WP_001092971.1 | lysozyme | - |
| ER3413_RS08055 () | 1621821..1622132 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| ER3413_RS08060 () | 1622137..1622352 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ER3413_RS08065 () | 1623106..1623321 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ER3413_RS08070 () | 1623622..1623834 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ER3413_RS25310 () | 1623889..1623978 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| ER3413_RS08075 () | 1624256..1625008 | - | 753 | WP_001047135.1 | antitermination protein | - |
| ER3413_RS08080 () | 1625022..1626071 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ER3413_RS08085 () | 1626073..1626351 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| ER3413_RS08090 () | 1626418..1626669 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| ER3413_RS08095 () | 1626886..1627041 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ER3413_RS08100 () | 1627113..1627400 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ER3413_RS08105 () | 1627400..1627639 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ER3413_RS23485 () | 1627664..1627969 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| ER3413_RS08110 () | 1628172..1628504 | + | 333 | WP_001301033.1 | protein FlxA | - |
| ER3413_RS22760 () | 1628941..1629090 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| ER3413_RS08115 () | 1629125..1629403 | - | 279 | Protein_1549 | hypothetical protein | - |
| ER3413_RS08120 () | 1629387..1629617 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ER3413_RS08125 () | 1629701..1630108 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ER3413_RS08130 () | 1630275..1630430 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ER3413_RS08135 () | 1630590..1630808 | + | 219 | WP_038432574.1 | hypothetical protein | - |
| ER3413_RS08145 () | 1631376..1631564 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ER3413_RS08150 () | 1631561..1631752 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| ER3413_RS23500 () | 1631845..1632612 | + | 768 | Protein_1556 | exonuclease | - |
| ER3413_RS08160 () | 1632609..1633304 | + | 696 | Protein_1557 | IS3 family transposase IS2 | Transposase |
| ER3413_RS25320 () | 1633318..1634475 | + | 1158 | Protein_1558 | Tyrosine recombinase XerD ; Integrase | Integrase |
| ER3413_RS24795 () | 1634495..1634605 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| ER3413_RS08170 () | 1634663..1635682 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| ER3413_RS08175 () | 1635694..1636908 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ER3413_RS08180 () | 1637114..1637440 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| ER3413_RS08185 () | 1637575..1637916 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ER3413_RS08190 () | 1637951..1638511 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ER3413_RS08195 () | 1638514..1639224 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.003 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |