MGE detailed information
MGE type: Prophage MGE length: 54789 bp
Accession: NZ_CP009685 Location: 2025689..2080477 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Accession: NZ_CP009685 Location: 2025689..2080477 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EO53_RS09980 () | 2021780..2022145 | + | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| EO53_RS09985 () | 2022132..2022461 | + | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| EO53_RS09990 () | 2022500..2023321 | - | 822 | WP_001260865.1 | serine protease | - |
| EO53_RS09995 () | 2023421..2023504 | - | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| EO53_RS10000 () | 2023597..2023905 | - | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| EO53_RS26110 () | 2024161..2024280 | + | 120 | WP_001299090.1 | hypothetical protein | - |
| EO53_RS10005 () | 2024329..2025582 | - | 1254 | WP_000091840.1 | MFS transporter | - |
| EO53_RS10010 () | 2025689..2026582 | + | 894 | WP_001019525.1 | hypothetical protein | VF |
| EO53_RS10015 () | 2026717..2027937 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| EO53_RS10020 () | 2028062..2028757 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| EO53_RS10025 () | 2028710..2030002 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EO53_RS10030 () | 2030161..2030775 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| EO53_RS10035 () | 2030818..2031672 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| EO53_RS10040 () | 2031674..2032291 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EO53_RS10045 () | 2032302..2034725 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| EO53_RS10050 () | 2034786..2037212 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| EO53_RS10055 () | 2037411..2037716 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| EO53_RS10060 () | 2037824..2038534 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| EO53_RS10065 () | 2038537..2039097 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| EO53_RS10070 () | 2039132..2039473 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| EO53_RS10075 () | 2039608..2039934 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| EO53_RS10080 () | 2040140..2041354 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| EO53_RS10085 () | 2041366..2042385 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| EO53_RS25200 () | 2042443..2042553 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| EO53_RS25675 () | 2042573..2043730 | - | 1158 | Protein_1914 | hypothetical protein ; Integrase | Integrase |
| EO53_RS10095 () | 2043744..2044439 | - | 696 | Protein_1915 | IS3 family transposase IS2 | Transposase |
| EO53_RS23865 () | 2044436..2045203 | - | 768 | Protein_1916 | exonuclease | - |
| EO53_RS10105 () | 2045296..2045487 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| EO53_RS10110 () | 2045484..2045672 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| EO53_RS10120 () | 2046240..2046458 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| EO53_RS10125 () | 2046618..2046773 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| EO53_RS10130 () | 2046940..2047347 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| EO53_RS10135 () | 2047431..2047661 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| EO53_RS10140 () | 2047645..2047923 | + | 279 | Protein_1923 | hypothetical protein | - |
| EO53_RS23065 () | 2047958..2048107 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| EO53_RS10145 () | 2048544..2048876 | - | 333 | WP_001301033.1 | protein FlxA | - |
| EO53_RS23880 () | 2049079..2049384 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| EO53_RS10150 () | 2049409..2049648 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EO53_RS10155 () | 2049648..2049935 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EO53_RS10160 () | 2050007..2050162 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EO53_RS10165 () | 2050379..2050630 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| EO53_RS10170 () | 2050697..2050975 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| EO53_RS10175 () | 2050977..2052026 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| EO53_RS10180 () | 2052040..2052792 | + | 753 | WP_001047135.1 | antitermination protein | - |
| EO53_RS25685 () | 2053070..2053159 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| EO53_RS10185 () | 2053214..2053426 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EO53_RS10190 () | 2053727..2053942 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EO53_RS10195 () | 2054696..2054911 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EO53_RS10200 () | 2054916..2055227 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| EO53_RS10205 () | 2055224..2055757 | + | 534 | WP_001092971.1 | lysozyme | - |
| EO53_RS10210 () | 2055754..2056251 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| EO53_RS10215 () | 2056614..2056826 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EO53_RS23885 () | 2056837..2057025 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| EO53_RS25690 () | 2057028..2057093 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| EO53_RS10220 () | 2057172..2057327 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| EO53_RS10225 () | 2057499..2057672 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| EO53_RS10230 () | 2057824..2058234 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| EO53_RS10235 () | 2058292..2058525 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| EO53_RS10240 () | 2058914..2059483 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| EO53_RS10245 () | 2059434..2060396 | + | 963 | WP_001027733.1 | phage tail protein | - |
| EO53_RS10250 () | 2060396..2060971 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| EO53_RS10255 () | 2061069..2061659 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EO53_RS10260 () | 2061976..2062209 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EO53_RS25695 () | 2062278..2062391 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| EO53_RS10265 () | 2062912..2064279 | + | 1368 | Protein_1954 | MHS family MFS transporter | - |
| EO53_RS10270 () | 2064368..2065828 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| EO53_RS10275 () | 2065863..2066066 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EO53_RS10280 () | 2066243..2066929 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| EO53_RS10285 () | 2067018..2067764 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| EO53_RS10290 () | 2067901..2069946 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| EO53_RS10295 () | 2069990..2070508 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| EO53_RS10300 () | 2070784..2071176 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| EO53_RS10305 () | 2071431..2072321 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| EO53_RS10310 () | 2072540..2072635 | - | 96 | WP_000901367.1 | protein MgtS | - |
| EO53_RS10315 () | 2072762..2073949 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| EO53_RS10320 () | 2074144..2075043 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| EO53_RS10325 () | 2075074..2075292 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| EO53_RS10330 () | 2075324..2075707 | - | 384 | WP_000091199.1 | hypothetical protein | VF |
| EO53_RS10335 () | 2075727..2076161 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| EO53_RS10340 () | 2076373..2077038 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| EO53_RS10345 () | 2077063..2078253 | - | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| EO53_RS10350 () | 2078403..2079518 | - | 1116 | WP_000258599.1 | putative protein YneK | - |
| EO53_RS10355 () | 2079596..2080477 | - | 882 | WP_000366501.1 | hypothetical protein | VF |
| EO53_RS10360 () | 2080578..2081966 | + | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| EO53_RS10365 () | 2082030..2082956 | + | 927 | WP_000257409.1 | glutaminase B | - |
| EO53_RS10370 () | 2082956..2083315 | + | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| EO53_RS10375 () | 2083388..2084374 | + | 987 | Protein_1976 | GGDEF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |