MGE detailed information
MGE type: Conjugative plasmid MGE length: 108501 bp
Accession: NZ_CP009167 Location: 1..108501 Organism: Escherichia coli 1303 Replicon: plasmid p1303_109
Accession: NZ_CP009167 Location: 1..108501 Organism: Escherichia coli 1303 Replicon: plasmid p1303_109
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC1303_RS24315 () | 101..175 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| EC1303_RS24320 () | 168..1025 | + | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| EC1303_RS27675 () | 2375..2626 | + | 252 | WP_071889275.1 | MarR family transcriptional regulator | - |
| EC1303_RS24330 () | 3125..5221 | - | 2097 | WP_000422420.1 | hypothetical protein | - |
| EC1303_RS24335 () | 5237..5788 | - | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| EC1303_RS24340 () | 5952..8960 | + | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| EC1303_RS24345 () | 9551..10612 | - | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| EC1303_RS24350 () | 10722..11135 | - | 414 | WP_001351580.1 | hypothetical protein | - |
| EC1303_RS24355 () | 11299..11763 | - | 465 | WP_001351581.1 | polymer-forming cytoskeletal protein | - |
| EC1303_RS24360 () | 11869..12282 | - | 414 | WP_000483319.1 | hypothetical protein | - |
| EC1303_RS24370 () | 12885..13073 | - | 189 | WP_000131420.1 | hypothetical protein | - |
| EC1303_RS29460 () | 13904..15367 | + | 1464 | Protein_11 | IS66 family transposase | - |
| EC1303_RS29055 () | 15428..15781 | + | 354 | Protein_12 | IS3 family transposase ISKpn37 | Transposase |
| EC1303_RS24405 () | 16321..17013 | - | 693 | WP_000286435.1 | hypothetical protein | - |
| EC1303_RS24415 () | 17766..22703 | - | 4938 | WP_041124236.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EC1303_RS24425 () | 23339..27454 | - | 4116 | WP_000995793.1 | Outer membrane protein IcsA autotransporter | VF |
| EC1303_RS24430 () | 28036..28461 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24435 () | 28458..28808 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24440 () | 28839..30452 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24445 () | 30714..31661 | + | 948 | WP_041124237.1 | Outer membrane protease OmpP | VF |
| EC1303_RS24450 () | 31766..33253 | + | 1488 | WP_072165818.1 | alpha/beta hydrolase | - |
| EC1303_RS28475 () | 33629..33889 | + | 261 | Protein_21 | hypothetical protein | - |
| EC1303_RS24455 () | 34010..34750 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| EC1303_RS24460 () | 34993..35970 | - | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| EC1303_RS27700 () | 36617..36901 | - | 285 | Protein_24 | IS3 family transposase ISKpn37 | Transposase |
| EC1303_RS25615 () | 36976..37539 | + | 564 | Protein_25 | IS66 family transposase ISSfl3 | Transposase |
| EC1303_RS24485 () | 37526..37789 | + | 264 | WP_001345816.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| EC1303_RS29065 () | 37822..38773 | + | 952 | Protein_27 | IS66 family transposase ISCro1 | Transposase |
| EC1303_RS27715 () | 39125..41656 | - | 2532 | WP_163448519.1 | Outer membrane protein IcsA autotransporter | VF |
| EC1303_RS29075 () | 42035..42154 | + | 120 | Protein_29 | transposase | - |
| EC1303_RS28495 () | 42224..43245 | - | 1022 | Protein_30 | IS3 family transposase | - |
| EC1303_RS24510 () | 43312..44293 | + | 982 | Protein_31 | IS110 family transposase | - |
| EC1303_RS24520 () | 44546..44650 | - | 105 | WP_001443026.1 | IS3 family transposase IS1351 | Transposase |
| EC1303_RS24525 () | 44678..45514 | - | 837 | WP_041124238.1 | Right origin-binding protein | VF |
| EC1303_RS28500 () | 46197..47162 | - | 966 | Protein_34 | IS3 family transposase | - |
| EC1303_RS24540 () | 49267..49485 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| EC1303_RS24545 () | 49487..49792 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| EC1303_RS24550 () | 49821..50600 | + | 780 | WP_050544099.1 | site-specific integrase | - |
| EC1303_RS24555 () | 51321..52076 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| EC1303_RS24560 () | 52573..53739 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| EC1303_RS24565 () | 53739..54710 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| EC1303_RS29355 () | 55792..56693 | + | 902 | Protein_41 | DUF1281 domain-containing protein | - |
| EC1303_RS28510 () | 56697..57002 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| EC1303_RS24580 () | 57079..57762 | + | 684 | WP_000085939.1 | DNA methylase | - |
| EC1303_RS24585 () | 57763..57984 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| EC1303_RS24590 () | 57878..58432 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| EC1303_RS29465 () | 58478..59254 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| EC1303_RS24600 () | 59558..59860 | + | 303 | WP_072095193.1 | antirestriction protein | - |
| EC1303_RS24605 () | 59907..60329 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| EC1303_RS24610 () | 60326..60517 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| EC1303_RS24620 () | 61323..61862 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| EC1303_RS24625 () | 61919..62152 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| EC1303_RS24630 () | 62218..64176 | + | 1959 | WP_000117172.1 | ParB/RepB/Spo0J family partition protein | - |
| EC1303_RS24635 () | 64231..64664 | + | 434 | Protein_53 | conjugation system SOS inhibitor PsiB | - |
| EC1303_RS24640 () | 64661..65380 | + | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| - () | 65392..65590 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65392..65590 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65392..65590 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65392..65590 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| EC1303_RS24650 () | 65655..65813 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| EC1303_RS29360 () | 66051..66410 | - | 360 | Protein_56 | hypothetical protein | - |
| EC1303_RS24665 () | 66711..66998 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| EC1303_RS24670 () | 67117..67938 | + | 822 | WP_001234474.1 | DUF945 domain-containing protein | - |
| EC1303_RS24675 () | 68233..68823 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| EC1303_RS24680 () | 69157..69540 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| EC1303_RS24685 () | 69730..70416 | + | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| EC1303_RS24690 () | 70510..70737 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| EC1303_RS24695 () | 70771..71136 | + | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| EC1303_RS24700 () | 71151..71462 | + | 312 | WP_000012126.1 | type IV conjugative transfer system protein TraL | - |
| EC1303_RS24705 () | 71484..72050 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| EC1303_RS24710 () | 72061..72765 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| EC1303_RS24715 () | 72765..74192 | + | 1428 | WP_000146673.1 | conjugal transfer protein TraB | - |
| EC1303_RS24720 () | 74182..74772 | + | 591 | WP_000002779.1 | conjugal transfer protein TraP | - |
| EC1303_RS24725 () | 74726..75079 | + | 354 | WP_071594066.1 | conjugal transfer protein TrbD | - |
| EC1303_RS24730 () | 75072..75323 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| EC1303_RS24735 () | 75320..75835 | + | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EC1303_RS27790 () | 75970..76191 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| EC1303_RS24745 () | 76351..78978 | + | 2628 | WP_041124239.1 | type IV secretion system protein TraC | - |
| EC1303_RS24750 () | 78975..79361 | + | 387 | WP_032082946.1 | type-F conjugative transfer system protein TrbI | - |
| EC1303_RS24755 () | 79358..79990 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| EC1303_RS24760 () | 79987..80979 | + | 993 | WP_041124240.1 | conjugal transfer pilus assembly protein TraU | - |
| EC1303_RS24765 () | 80988..81626 | + | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EC1303_RS24770 () | 81623..83431 | + | 1809 | WP_000821840.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EC1303_RS24775 () | 83458..83715 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| EC1303_RS24780 () | 83708..84451 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EC1303_RS24785 () | 84467..84814 | + | 348 | WP_032341883.1 | conjugal transfer protein TrbA | - |
| EC1303_RS27795 () | 84816..85091 | - | 276 | WP_001513501.1 | hypothetical protein | - |
| EC1303_RS24790 () | 85172..85456 | + | 285 | WP_000624103.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EC1303_RS24795 () | 85443..85988 | + | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EC1303_RS24800 () | 85918..86259 | + | 342 | WP_001406994.1 | P-type conjugative transfer protein TrbJ | - |
| EC1303_RS24805 () | 86213..86638 | + | 426 | WP_071605792.1 | F-type conjugal transfer protein TrbF | - |
| EC1303_RS24810 () | 86625..87998 | + | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| EC1303_RS24815 () | 87995..90820 | + | 2826 | WP_041124241.1 | conjugal transfer mating pair stabilization protein TraG | - |
| EC1303_RS24820 () | 90817..91326 | + | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| EC1303_RS24825 () | 91340..92071 | + | 732 | WP_024187508.1 | complement resistance protein TraT | - |
| EC1303_RS24830 () | 92323..94476 | + | 2154 | WP_001603683.1 | type IV conjugative transfer system coupling protein TraD | - |
| EC1303_RS24835 () | 94485..94883 | - | 399 | WP_000911317.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| EC1303_RS24840 () | 94883..95110 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| EC1303_RS24845 () | 95192..100462 | + | 5271 | WP_041124242.1 | Multifunctional conjugation protein TraI | Relaxase |
| EC1303_RS24850 () | 100482..101228 | + | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| EC1303_RS24855 () | 101287..102147 | + | 861 | WP_000704512.1 | putative protein YcjY | VF |
| EC1303_RS24860 () | 102250..102807 | + | 558 | WP_000139319.1 | fertility inhibition protein FinO | - |
| EC1303_RS24865 () | 102962..103165 | + | 204 | WP_041124243.1 | hypothetical protein | - |
| EC1303_RS24870 () | 103999..104424 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24875 () | 104421..104771 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24880 () | 104802..106415 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| EC1303_RS24885 () | 106448..106909 | + | 462 | WP_000760079.1 | thermonuclease family protein | - |
| - () | 107569..107630 | - | 62 | NuclAT_1 | - | - |
| - () | 107569..107630 | - | 62 | NuclAT_1 | - | - |
| - () | 107569..107630 | - | 62 | NuclAT_1 | - | - |
| - () | 107569..107630 | - | 62 | NuclAT_1 | - | - |
| EC1303_RS25780 () | 107617..107823 | + | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | - |
| EC1303_RS24895 () | 108107..108355 | + | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|