MGE detailed information
MGE type: Genomic_island MGE length: 26530 bp
Accession: NZ_CP009040 Location: 2300623..2327152 Organism: Xanthomonas citri pv. citri strain AW16 Replicon: chromosome
Accession: NZ_CP009040 Location: 2300623..2327152 Organism: Xanthomonas citri pv. citri strain AW16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD06_RS10380 () | 2297545..2297721 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD06_RS10385 () | 2297941..2298342 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD06_RS10395 () | 2298631..2299722 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD06_RS10405 () | 2300623..2302794 | + | 2172 | WP_015472108.1 | DotA/TraY family protein | - |
| AMD06_RS10410 () | 2302804..2303325 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD06_RS26065 () | 2304190..2305146 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD06_RS10420 () | 2305213..2306346 | - | 1134 | Protein_1971 | IS5 family transposase ISXo4 | Transposase |
| AMD06_RS10425 () | 2306386..2307473 | - | 1088 | Protein_1972 | IS3 family transposase ISXcd1 | Transposase |
| AMD06_RS10435 () | 2307686..2307865 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD06_RS10440 () | 2308136..2308450 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD06_RS10445 () | 2308453..2308743 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD06_RS10450 () | 2308731..2309009 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD06_RS10455 () | 2309179..2310447 | - | 1269 | Protein_1977 | Tn3 family transposase ISPsy42 | Transposase |
| AMD06_RS10465 () | 2310496..2311721 | + | 1226 | Protein_1978 | IS3 family transposase ISJsp1 | Transposase |
| AMD06_RS10470 () | 2312340..2313296 | + | 957 | WP_015472114.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD06_RS10475 () | 2313486..2315594 | + | 2109 | WP_015472116.1 | AAA family ATPase | - |
| AMD06_RS10480 () | 2315645..2315833 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD06_RS10485 () | 2315830..2317416 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD06_RS10490 () | 2317413..2318330 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD06_RS10495 () | 2318339..2318668 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD06_RS10500 () | 2318772..2319182 | + | 411 | WP_080936372.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD06_RS26070 () | 2319205..2319381 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD06_RS24260 () | 2319574..2319774 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD06_RS10510 () | 2320335..2320595 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD06_RS10515 () | 2320994..2321995 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD06_RS10520 () | 2322228..2322461 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD06_RS10525 () | 2323048..2324442 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD06_RS10530 () | 2324439..2326556 | + | 2118 | WP_015463321.1 | ATP-binding protein | - |
| AMD06_RS26075 () | 2326976..2327152 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD06_RS10540 () | 2327435..2328541 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD06_RS10545 () | 2328584..2329093 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD06_RS10550 () | 2329105..2330763 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD06_RS10555 () | 2331074..2331679 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0.001 |