MGE detailed information
MGE type: Genomic_island MGE length: 26521 bp
Accession: NZ_CP009025 Location: 2820482..2847002 Organism: Xanthomonas citri pv. citri strain BL18 Replicon: chromosome
Accession: NZ_CP009025 Location: 2820482..2847002 Organism: Xanthomonas citri pv. citri strain BL18 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD12_RS12735 () | 2817404..2817580 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD12_RS12740 () | 2817800..2818201 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD12_RS12750 () | 2818490..2819581 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD12_RS12760 () | 2820482..2822653 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD12_RS12765 () | 2822663..2823184 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD12_RS25250 () | 2824049..2825005 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD12_RS12775 () | 2825072..2826205 | - | 1134 | Protein_2412 | IS5 family transposase ISXo4 | Transposase |
| AMD12_RS12780 () | 2826245..2827332 | - | 1088 | Protein_2413 | IS3 family transposase ISXcd1 | Transposase |
| AMD12_RS12790 () | 2827545..2827724 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD12_RS12795 () | 2827995..2828309 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD12_RS12800 () | 2828312..2828602 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD12_RS12805 () | 2828590..2828868 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD12_RS12810 () | 2829038..2830306 | - | 1269 | Protein_2418 | Tn3 family transposase ISPsy42 | Transposase |
| AMD12_RS12820 () | 2830355..2831580 | + | 1226 | Protein_2419 | IS3 family transposase ISJsp1 | Transposase |
| AMD12_RS12825 () | 2832198..2833154 | + | 957 | WP_197707729.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD12_RS12830 () | 2833344..2835452 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD12_RS12835 () | 2835503..2835691 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD12_RS12840 () | 2835688..2837274 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD12_RS12845 () | 2837271..2838188 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD12_RS12850 () | 2838197..2838526 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD12_RS12855 () | 2838630..2839040 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD12_RS25255 () | 2839063..2839239 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD12_RS25260 () | 2839302..2839487 | - | 186 | WP_015463319.1 | hypothetical protein | - |
| AMD12_RS23615 () | 2839432..2839632 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD12_RS12865 () | 2840193..2840453 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD12_RS12870 () | 2840852..2841853 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD12_RS12875 () | 2842086..2842319 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD12_RS12880 () | 2842898..2844292 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD12_RS12885 () | 2844289..2846406 | + | 2118 | WP_011051591.1 | ATP-binding protein | - |
| AMD12_RS25265 () | 2846826..2847002 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD12_RS12895 () | 2847285..2848391 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD12_RS12900 () | 2848434..2848943 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD12_RS12905 () | 2848955..2850613 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD12_RS12910 () | 2850924..2851529 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |