MGE detailed information
MGE type: Genomic_island MGE length: 26522 bp
Accession: NZ_CP009013 Location: 2809303..2835824 Organism: Xanthomonas citri pv. citri strain JX4 Replicon: chromosome
Accession: NZ_CP009013 Location: 2809303..2835824 Organism: Xanthomonas citri pv. citri strain JX4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD21_RS12725 () | 2806225..2806401 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD21_RS12730 () | 2806621..2807022 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD21_RS12740 () | 2807311..2808402 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD21_RS12750 () | 2809303..2811474 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD21_RS12755 () | 2811484..2812005 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD21_RS24875 () | 2812444..2812584 | - | 141 | WP_157860651.1 | hypothetical protein | - |
| AMD21_RS25065 () | 2812870..2813826 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD21_RS12765 () | 2813893..2815026 | - | 1134 | Protein_2399 | IS5 family transposase | - |
| AMD21_RS12770 () | 2815066..2816153 | - | 1088 | Protein_2400 | IS3 family transposase | - |
| AMD21_RS12780 () | 2816366..2816545 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD21_RS12785 () | 2816816..2817130 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD21_RS12790 () | 2817133..2817423 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD21_RS12795 () | 2817411..2817689 | - | 279 | WP_040259533.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD21_RS12800 () | 2817859..2819127 | - | 1269 | Protein_2405 | transposase | - |
| AMD21_RS12810 () | 2819176..2820401 | + | 1226 | Protein_2406 | IS3 family transposase | - |
| AMD21_RS12815 () | 2821020..2821976 | + | 957 | WP_015463313.1 | recombinase family protein | - |
| AMD21_RS12820 () | 2822166..2824274 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD21_RS12825 () | 2824325..2824513 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD21_RS12830 () | 2824510..2826096 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD21_RS12835 () | 2826093..2827010 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD21_RS12840 () | 2827019..2827348 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD21_RS12845 () | 2827452..2827862 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD21_RS25070 () | 2827885..2828061 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD21_RS25075 () | 2828124..2828309 | - | 186 | WP_015463319.1 | hypothetical protein | - |
| AMD21_RS23480 () | 2828254..2828454 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD21_RS12855 () | 2829015..2829275 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD21_RS12860 () | 2829674..2830675 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD21_RS12865 () | 2830908..2831141 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD21_RS12870 () | 2831720..2833114 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD21_RS12875 () | 2833111..2835228 | + | 2118 | WP_015463321.1 | ATP-binding protein | - |
| AMD21_RS25080 () | 2835648..2835824 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD21_RS12885 () | 2836107..2837213 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD21_RS12890 () | 2837256..2837765 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD21_RS12895 () | 2837777..2839435 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD21_RS12900 () | 2839746..2840351 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |