MGE detailed information
MGE type: Genomic_island MGE length: 26522 bp
Accession: NZ_CP009010 Location: 2809318..2835839 Organism: Xanthomonas citri pv. citri strain JX5 Replicon: chromosome
Accession: NZ_CP009010 Location: 2809318..2835839 Organism: Xanthomonas citri pv. citri strain JX5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD20_RS12725 () | 2806240..2806416 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD20_RS12730 () | 2806636..2807037 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD20_RS12740 () | 2807326..2808417 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD20_RS12750 () | 2809318..2811489 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD20_RS12755 () | 2811499..2812020 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD20_RS24915 () | 2812459..2812599 | - | 141 | WP_157860651.1 | hypothetical protein | - |
| AMD20_RS25080 () | 2812885..2813841 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD20_RS12765 () | 2813908..2815041 | - | 1134 | Protein_2399 | IS5 family transposase ISXo4 | Transposase |
| AMD20_RS12770 () | 2815081..2816168 | - | 1088 | Protein_2400 | IS3 family transposase ISXcd1 | Transposase |
| AMD20_RS12780 () | 2816381..2816560 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD20_RS12785 () | 2816831..2817145 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD20_RS12790 () | 2817148..2817438 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD20_RS12795 () | 2817426..2817704 | - | 279 | WP_040259533.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD20_RS12800 () | 2817874..2819142 | - | 1269 | Protein_2405 | Tn3 family transposase ISPsy42 | Transposase |
| AMD20_RS12810 () | 2819191..2820416 | + | 1226 | Protein_2406 | IS3 family transposase ISJsp1 | Transposase |
| AMD20_RS12815 () | 2821035..2821991 | + | 957 | WP_015463313.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD20_RS12820 () | 2822181..2824289 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD20_RS12825 () | 2824340..2824528 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD20_RS12830 () | 2824525..2826111 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD20_RS12835 () | 2826108..2827025 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD20_RS12840 () | 2827034..2827363 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD20_RS12845 () | 2827467..2827877 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD20_RS25085 () | 2827900..2828076 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD20_RS23480 () | 2828269..2828469 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD20_RS12855 () | 2829030..2829290 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD20_RS12860 () | 2829689..2830690 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD20_RS12865 () | 2830923..2831156 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD20_RS12870 () | 2831735..2833129 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD20_RS12875 () | 2833126..2835243 | + | 2118 | WP_015463321.1 | ATP-binding protein | - |
| AMD20_RS25090 () | 2835663..2835839 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD20_RS12885 () | 2836122..2837228 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD20_RS12890 () | 2837271..2837780 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD20_RS12895 () | 2837792..2839450 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD20_RS12900 () | 2839761..2840366 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |