MGE detailed information
MGE type: Genomic_island MGE length: 26521 bp
Accession: NZ_CP008995 Location: 2820489..2847009 Organism: Xanthomonas citri pv. citri strain NT17 Replicon: chromosome
Accession: NZ_CP008995 Location: 2820489..2847009 Organism: Xanthomonas citri pv. citri strain NT17 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD13_RS12750 () | 2817411..2817587 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD13_RS12755 () | 2817807..2818208 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD13_RS12765 () | 2818497..2819588 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD13_RS12775 () | 2820489..2822660 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD13_RS12780 () | 2822670..2823191 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD13_RS24915 () | 2823630..2823770 | - | 141 | WP_157860651.1 | hypothetical protein | - |
| AMD13_RS25270 () | 2824056..2825012 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD13_RS12790 () | 2825079..2826212 | - | 1134 | Protein_2413 | IS5 family transposase ISXo4 | Transposase |
| AMD13_RS12795 () | 2826252..2827339 | - | 1088 | Protein_2414 | IS3 family transposase ISXcd1 | Transposase |
| AMD13_RS12805 () | 2827552..2827731 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD13_RS12810 () | 2828002..2828316 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD13_RS12815 () | 2828319..2828609 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD13_RS12820 () | 2828597..2828875 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD13_RS12825 () | 2829045..2830313 | - | 1269 | Protein_2419 | Tn3 family transposase ISPsy42 | Transposase |
| AMD13_RS12835 () | 2830362..2831587 | + | 1226 | Protein_2420 | IS3 family transposase ISJsp1 | Transposase |
| AMD13_RS12840 () | 2832205..2833161 | + | 957 | WP_197707729.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD13_RS12845 () | 2833351..2835459 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD13_RS12850 () | 2835510..2835698 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD13_RS12855 () | 2835695..2837281 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD13_RS12860 () | 2837278..2838195 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD13_RS12865 () | 2838204..2838533 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD13_RS12870 () | 2838637..2839047 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD13_RS25275 () | 2839070..2839246 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD13_RS23625 () | 2839439..2839639 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD13_RS12880 () | 2840200..2840460 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD13_RS12885 () | 2840859..2841860 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD13_RS12890 () | 2842093..2842326 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD13_RS12895 () | 2842905..2844299 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD13_RS12900 () | 2844296..2846413 | + | 2118 | WP_011051591.1 | ATP-binding protein | - |
| AMD13_RS25280 () | 2846833..2847009 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD13_RS12910 () | 2847292..2848398 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD13_RS12915 () | 2848441..2848950 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD13_RS12920 () | 2848962..2850620 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD13_RS12925 () | 2850931..2851536 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |