MGE detailed information
MGE type: Prophage MGE length: 44134 bp
Accession: NZ_CP007391 Location: 4073654..4117787 Organism: Escherichia coli strain ST540 Replicon: chromosome
Accession: NZ_CP007391 Location: 4073654..4117787 Organism: Escherichia coli strain ST540 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF61_RS20315 () | 4069481..4070476 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| CF61_RS20320 () | 4070941..4073079 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| CF61_RS20325 () | 4073241..4073657 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | - |
| CF61_RS20330 () | 4073654..4073884 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CF61_RS20335 () | 4074190..4076270 | + | 2081 | Protein_3872 | hypothetical protein | - |
| CF61_RS20350 () | 4077604..4078644 | + | 1041 | Protein_3874 | hypothetical protein | - |
| CF61_RS20355 () | 4078907..4080040 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CF61_RS20360 () | 4080060..4080344 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| CF61_RS20365 () | 4080341..4080538 | - | 198 | WP_000215657.1 | hypothetical protein | - |
| CF61_RS20370 () | 4080769..4081758 | - | 990 | Protein_3878 | IS30 family transposase IS30D | Transposase |
| CF61_RS20375 () | 4081823..4082719 | + | 897 | Protein_3879 | IS3 family transposase ISEhe3 | Transposase |
| CF61_RS20380 () | 4082821..4083102 | + | 282 | WP_000639434.1 | hypothetical protein | - |
| CF61_RS27220 () | 4083203..4083900 | - | 698 | Protein_3881 | IS1 family transposase IS1R | Transposase |
| CF61_RS20395 () | 4084010..4085334 | + | 1325 | Protein_3882 | pyridine nucleotide-disulfide oxidoreductase | - |
| CF61_RS26140 () | 4085483..4086184 | - | 702 | Protein_3883 | IS6 family transposase | - |
| CF61_RS20415 () | 4086679..4087470 | + | 792 | WP_000016494.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CF61_RS20420 () | 4087608..4087883 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CF61_RS24620 () | 4088145..4089135 | - | 991 | Protein_3886 | IS30 family transposase IS30D | Transposase |
| CF61_RS20435 () | 4089200..4090095 | + | 896 | Protein_3887 | IS3 family transposase ISEhe3 | Transposase |
| CF61_RS20440 () | 4090197..4090478 | + | 282 | WP_000639434.1 | hypothetical protein | - |
| CF61_RS27235 () | 4090579..4091276 | - | 698 | Protein_3889 | IS1 family transposase IS1R | Transposase |
| CF61_RS20455 () | 4091386..4092711 | + | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| CF61_RS20460 () | 4092860..4093564 | - | 705 | WP_001505086.1 | IS6 family transposase IS26 | Transposase |
| CF61_RS20465 () | 4093630..4094061 | + | 432 | WP_001707302.1 | hypothetical protein | - |
| CF61_RS20470 () | 4094058..4094849 | + | 792 | WP_000016494.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CF61_RS20475 () | 4094987..4095262 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CF61_RS20480 () | 4095256..4095900 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| CF61_RS20485 () | 4096122..4097093 | + | 972 | WP_001103691.1 | hypothetical protein | - |
| CF61_RS20490 () | 4097098..4097490 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| CF61_RS20495 () | 4097495..4098766 | - | 1272 | WP_025269845.1 | Y-family DNA polymerase | - |
| CF61_RS20500 () | 4098766..4099203 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CF61_RS20505 () | 4099200..4099448 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| CF61_RS20510 () | 4099866..4100768 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CF61_RS27245 () | 4100772..4101076 | + | 305 | Protein_3902 | hypothetical protein | - |
| CF61_RS20520 () | 4101153..4101836 | + | 684 | WP_000086185.1 | DNA methylase | - |
| CF61_RS20525 () | 4101837..4102058 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| CF61_RS20530 () | 4102072..4102506 | + | 435 | WP_025269846.1 | DUF1380 family protein | - |
| CF61_RS20535 () | 4102551..4103321 | + | 771 | WP_025269847.1 | hypothetical protein | - |
| CF61_RS20540 () | 4103399..4104511 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| CF61_RS20550 () | 4105210..4105512 | + | 303 | WP_072128865.1 | antirestriction protein | - |
| CF61_RS20555 () | 4105559..4105980 | + | 422 | Protein_3909 | DUF1380 family protein | - |
| CF61_RS20560 () | 4105977..4106168 | + | 192 | WP_025269849.1 | hypothetical protein | - |
| CF61_RS26160 () | 4106441..4106689 | - | 249 | WP_071781657.1 | hypothetical protein | - |
| CF61_RS20565 () | 4107201..4107431 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CF61_RS20570 () | 4107483..4108844 | + | 1362 | WP_000199439.1 | DUF3560 domain-containing protein | - |
| CF61_RS20575 () | 4108892..4109455 | + | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| CF61_RS20580 () | 4109481..4109687 | + | 207 | WP_001774176.1 | hypothetical protein | - |
| CF61_RS28465 () | 4110098..4110304 | + | 207 | WP_000275853.1 | hypothetical protein | - |
| CF61_RS20595 () | 4110330..4110869 | + | 540 | WP_000290839.1 | single-stranded DNA-binding protein | - |
| CF61_RS20600 () | 4110932..4111165 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| CF61_RS20605 () | 4111231..4113189 | + | 1959 | WP_025269850.1 | ParB/RepB/Spo0J family partition protein | - |
| CF61_RS20610 () | 4113244..4113678 | + | 435 | WP_001470779.1 | conjugation system SOS inhibitor PsiB | - |
| CF61_RS20615 () | 4113675..4114394 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CF61_RS28265 () | 4114406..4114594 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 4114406..4114630 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4114406..4114630 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4114406..4114630 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4114406..4114630 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4114563..4114628 | + | 66 | - | - | Antitoxin Detail |
| CF61_RS20625 () | 4114674..4114832 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CF61_RS28470 () | 4115523..4115729 | + | 207 | WP_000547974.1 | hypothetical protein | - |
| CF61_RS20640 () | 4115754..4116041 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CF61_RS20645 () | 4116160..4116981 | + | 822 | WP_025269852.1 | DUF945 domain-containing protein | - |
| CF61_RS20650 () | 4117278..4117787 | - | 510 | WP_025269853.1 | hypothetical protein | VF |
| CF61_RS20655 () | 4118202..4118585 | + | 384 | WP_025269854.1 | relaxosome protein TraM | - |
| CF61_RS20660 () | 4118776..4119462 | + | 687 | WP_025269855.1 | PAS domain-containing protein | - |
| CF61_RS20665 () | 4119556..4119783 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CF61_RS20670 () | 4119817..4120179 | + | 363 | WP_025269856.1 | type IV conjugative transfer system pilin TraA | - |
| CF61_RS20675 () | 4120184..4120495 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CF61_RS20680 () | 4120517..4121083 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CF61_RS20685 () | 4121094..4121798 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|