MGE detailed information
MGE type: Genomic_island MGE length: 17098 bp
Accession: NZ_CP007037 Location: 3579685..3596782 Organism: Shigella flexneri G1663 Replicon: chromosome
Accession: NZ_CP007037 Location: 3579685..3596782 Organism: Shigella flexneri G1663 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF2A_RS19380 (3575817) | 3575817..3576761 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| SF2A_RS19385 (3576758) | 3576758..3577591 | + | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| SF2A_RS19390 (3577591) | 3577591..3578355 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| SF2A_RS19395 (3578352) | 3578352..3579158 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| SF2A_RS19400 (3579164) | 3579164..3579565 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| SF2A_RS19405 (3579685) | 3579685..3580044 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| SF2A_RS19410 (3580041) | 3580041..3580316 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| SF2A_RS19415 (3580375) | 3580375..3581499 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| SF2A_RS19420 (3581499) | 3581499..3584234 | - | 2736 | WP_000149173.1 | hypothetical protein | VF |
| SF2A_RS19425 (3584231) | 3584231..3585298 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| SF2A_RS31010 (3585361) | 3585361..3585474 | - | 114 | WP_001296785.1 | protein YhiY | - |
| SF2A_RS19430 (3585664) | 3585664..3587286 | - | 1623 | WP_024260050.1 | DUF4049 domain-containing protein | - |
| SF2A_RS19435 (3587548) | 3587548..3589137 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| SF2A_RS19450 (3589554) | 3589554..3590552 | + | 999 | Protein_3560 | DUF2776 domain-containing protein | - |
| SF2A_RS19455 (3590639) | 3590639..3591115 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| SF2A_RS19460 (3591108) | 3591108..3591872 | - | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| SF2A_RS19465 (3592118) | 3592118..3592879 | + | 762 | WP_011069549.1 | hypothetical protein | VF |
| SF2A_RS19470 (3592986) | 3592986..3593498 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| SF2A_RS19475 (3593637) | 3593637..3594785 | - | 1149 | WP_005052604.1 | hypothetical protein | VF |
| SF2A_RS19485 (3594877) | 3594877..3596105 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| SF2A_RS28425 (3596076) | 3596076..3596342 | - | 267 | WP_071818670.1 | hypothetical protein | VF |
| SF2A_RS28430 (3596360) | 3596360..3596956 | - | 597 | WP_252705062.1 | hypothetical protein | VF |
| SF2A_RS19505 (3598299) | 3598299..3599498 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| SF2A_RS19510 (3599730) | 3599730..3601229 | + | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| SF2A_RS19515 (3601300) | 3601300..3601635 | - | 336 | WP_000626187.1 | universal stress protein UspB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.006 |