MGE detailed information
MGE type: Prophage MGE length: 16364 bp
Accession: NZ_CP007037 Location: 1551940..1568303 Organism: Shigella flexneri G1663 Replicon: chromosome
Accession: NZ_CP007037 Location: 1551940..1568303 Organism: Shigella flexneri G1663 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF2A_RS08480 (1547534) | 1547534..1547827 | - | 294 | WP_000081083.1 | ferredoxin family protein | - |
| SF2A_RS08485 (1547824) | 1547824..1549113 | - | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| SF2A_RS08490 (1549169) | 1549169..1550107 | - | 939 | WP_000080702.1 | electron transfer flavoprotein subunit alpha | - |
| SF2A_RS08495 (1550127) | 1550127..1550891 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| SF2A_RS08505 (1551212) | 1551212..1551691 | + | 480 | Protein_1553 | cupin domain-containing protein | - |
| SF2A_RS08510 (1551746) | 1551746..1552443 | + | 698 | WP_227804325.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS08515 (1552437) | 1552437..1552604 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| SF2A_RS08520 (1553006) | 1553006..1553767 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| SF2A_RS08525 (1553835) | 1553835..1554038 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| SF2A_RS08530 (1554286) | 1554286..1556565 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| SF2A_RS08535 (1556899) | 1556899..1557648 | - | 750 | Protein_1559 | Type 1 fimbrin D-mannose specific adhesin | VF |
| SF2A_RS08545 (1557704) | 1557704..1558401 | + | 698 | WP_252739101.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS08550 (1558417) | 1558417..1559322 | + | 906 | Protein_1561 | IS3 family transposase IS600 | Transposase |
| SF2A_RS27245 (1559319) | 1559319..1559624 | - | 306 | WP_094108346.1 | hypothetical protein | - |
| SF2A_RS08555 (1559649) | 1559649..1559888 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SF2A_RS08560 (1559888) | 1559888..1560175 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SF2A_RS08565 (1560247) | 1560247..1560402 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SF2A_RS08570 (1560620) | 1560620..1560871 | + | 252 | WP_000980987.1 | protein Rem | - |
| SF2A_RS08575 (1560938) | 1560938..1561216 | + | 279 | Protein_1567 | hypothetical protein | - |
| SF2A_RS08580 (1561218) | 1561218..1562267 | + | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| SF2A_RS08585 (1562280) | 1562280..1562636 | + | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SF2A_RS08590 (1562651) | 1562651..1563472 | + | 822 | WP_000762882.1 | antitermination protein | - |
| SF2A_RS29625 (1564382) | 1564382..1564490 | + | 109 | Protein_1571 | DUF3927 family protein | - |
| SF2A_RS08615 (1564771) | 1564771..1565106 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| SF2A_RS08620 (1565366) | 1565366..1565551 | + | 186 | Protein_1573 | DUF1737 domain-containing protein | - |
| SF2A_RS30295 (1565551) | 1565551..1565712 | + | 162 | WP_001323614.1 | hypothetical protein | - |
| SF2A_RS08625 (1565862) | 1565862..1566041 | + | 180 | WP_000372594.1 | class II holin family protein | - |
| SF2A_RS08640 (1567284) | 1567284..1568303 | + | 1020 | Protein_1577 | MHS family MFS transporter YdfJ | - |
| SF2A_RS08645 (1568392) | 1568392..1569852 | + | 1461 | WP_047343246.1 | mannitol dehydrogenase family protein | - |
| SF2A_RS08650 (1569888) | 1569888..1570091 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SF2A_RS08655 (1570269) | 1570269..1570955 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| SF2A_RS08660 (1571044) | 1571044..1571790 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.006 |