MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 30305 bp
Accession: NZ_CP006697 Location: 1..30305 Organism: Xylella fastidiosa subsp. sandyi Ann-1 Replicon: plasmid unnamed1
Accession: NZ_CP006697 Location: 1..30305 Organism: Xylella fastidiosa subsp. sandyi Ann-1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D934_RS12710 () | 74..1180 | + | 1107 | WP_020852265.1 | hypothetical protein | - |
| D934_RS12715 () | 1228..1515 | + | 288 | WP_020852266.1 | DUF4190 domain-containing protein | - |
| D934_RS12720 () | 1687..2691 | + | 1005 | WP_020852267.1 | T-DNA border endonuclease VirD2 | Relaxase |
| D934_RS12725 () | 2750..3076 | - | 327 | WP_024748613.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| D934_RS12730 () | 3073..3336 | - | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| D934_RS12735 () | 3448..4656 | + | 1209 | WP_042836803.1 | IS200-IS605 family transposase IS609 | Transposase |
| D934_RS12740 () | 4936..5199 | + | 264 | WP_080702547.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| D934_RS12745 () | 5171..5500 | + | 330 | WP_024748578.1 | type II toxin-antitoxin system YafQ family toxin | - |
| D934_RS12750 () | 5631..6074 | - | 444 | WP_014607318.1 | hypothetical protein | - |
| D934_RS12755 () | 6075..6827 | - | 753 | WP_020852243.1 | hypothetical protein | - |
| D934_RS12760 () | 6840..7196 | - | 357 | WP_020852242.1 | hypothetical protein | - |
| D934_RS12765 () | 7540..8103 | + | 564 | WP_038273547.1 | hypothetical protein | Relaxase |
| D934_RS12770 () | 8122..8377 | + | 256 | Protein_13 | antitoxin | - |
| D934_RS12775 () | 8417..9631 | - | 1215 | WP_042836805.1 | IS200-IS605 family transposase IS609 | Transposase |
| D934_RS12780 () | 9654..10067 | + | 414 | WP_024748685.1 | IS200/IS605 family transposase | - |
| D934_RS12785 () | 10177..10392 | - | 216 | WP_196230058.1 | antitoxin MazE family protein | - |
| D934_RS12790 () | 10921..12024 | - | 1104 | WP_020852248.1 | Plasmid encoded RepA protein | - |
| D934_RS12795 () | 12051..12653 | - | 603 | WP_020852249.1 | Tn3 family transposase TnBth3 | Transposase |
| D934_RS12800 () | 12791..13243 | - | 453 | WP_051404191.1 | type II toxin-antitoxin system VapC family toxin | - |
| D934_RS12805 () | 13243..13497 | - | 255 | WP_024748605.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| D934_RS12810 () | 13882..14111 | + | 230 | Protein_21 | recombinase family protein | - |
| D934_RS12815 () | 14480..15961 | + | 1482 | WP_024748606.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| D934_RS14905 () | 16534..16710 | + | 177 | WP_196230051.1 | hypothetical protein | - |
| D934_RS12825 () | 16714..17134 | + | 421 | Protein_24 | virulence factor | - |
| D934_RS12830 () | 17207..17557 | + | 351 | WP_020852254.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D934_RS12835 () | 17554..17877 | + | 324 | WP_020852255.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| D934_RS12850 () | 18590..18790 | + | 201 | WP_024748608.1 | hypothetical protein | - |
| D934_RS12855 () | 18787..19272 | + | 486 | WP_024748609.1 | hypothetical protein | - |
| D934_RS12860 () | 19275..19595 | + | 321 | WP_020852257.1 | TrbC/VirB2 family protein | - |
| D934_RS12865 () | 19600..19983 | + | 384 | WP_024748610.1 | VirB3 family type IV secretion system protein | - |
| D934_RS12870 () | 19946..22360 | + | 2415 | WP_024748611.1 | Type IV secretion system protein virB4 | VF |
| D934_RS12875 () | 22363..23028 | + | 666 | WP_013087957.1 | Type IV secretion system protein virB5 | VF |
| D934_RS12880 () | 23304..24281 | + | 978 | WP_020852259.1 | type IV secretion system protein | - |
| D934_RS12885 () | 24285..24995 | + | 711 | WP_020852260.1 | Type IV secretion system protein PtlE | VF |
| D934_RS12890 () | 24992..25771 | + | 780 | WP_020852261.1 | Type IV secretion system protein virB9 | VF |
| D934_RS12895 () | 25774..27072 | + | 1299 | WP_020852262.1 | Type IV secretion system protein virB10 | VF |
| D934_RS12900 () | 27050..28093 | + | 1044 | WP_020852263.1 | Type IV secretion system protein VirB11 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|