MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 169795 bp
Accession: NZ_CP005083 Location: 560094..729888 Organism: Sphingobium sp. TKS Replicon: chromosome
Accession: NZ_CP005083 Location: 560094..729888 Organism: Sphingobium sp. TKS Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K426_RS02855 () | 555636..556250 | + | 615 | WP_066553497.1 | recombinase family protein | - |
| K426_RS02860 () | 556395..556853 | + | 459 | WP_066553499.1 | mobile mystery protein A | - |
| K426_RS02865 () | 556850..557437 | + | 588 | WP_066553502.1 | mobile mystery protein B | - |
| K426_RS02870 () | 557552..558784 | - | 1233 | WP_066553503.1 | HipA domain-containing protein | - |
| K426_RS02875 () | 558784..559164 | - | 381 | WP_066553506.1 | helix-turn-helix domain-containing protein | - |
| K426_RS02880 () | 560352..561611 | + | 1260 | WP_066553508.1 | IS91 family transposase ISAzo26 | Transposase |
| K426_RS02885 () | 561792..562178 | - | 387 | WP_066561264.1 | DUF302 domain-containing protein | - |
| K426_RS31160 () | 562280..562615 | + | 336 | WP_145907158.1 | hypothetical protein | - |
| K426_RS02890 () | 562581..563477 | + | 897 | WP_066561267.1 | pirin family protein | - |
| K426_RS02895 () | 563474..563911 | + | 438 | WP_066553510.1 | OsmC family protein | - |
| K426_RS02900 () | 563942..564892 | - | 951 | WP_066553513.1 | glutathione S-transferase family protein | - |
| K426_RS02905 () | 565354..566058 | - | 705 | WP_066553516.1 | ECF RNA polymerase sigma-E factor | VF |
| K426_RS02910 () | 566281..566868 | + | 588 | WP_145907160.1 | ferritin-like domain-containing protein | - |
| K426_RS30105 () | 566951..567349 | + | 399 | WP_082748382.1 | c-type cytochrome | - |
| K426_RS02915 () | 567381..567755 | - | 375 | WP_066553525.1 | DUF488 domain-containing protein | - |
| K426_RS02920 () | 567755..568042 | - | 288 | WP_066553528.1 | hypothetical protein | - |
| K426_RS02925 () | 568057..568293 | - | 237 | WP_066553530.1 | hypothetical protein | - |
| K426_RS02930 () | 568331..569500 | - | 1170 | WP_066553534.1 | cystathionine gamma-synthase | - |
| K426_RS02935 () | 569493..571205 | - | 1713 | WP_066553537.1 | NADPH-dependent assimilatory sulfite reductase hemoprotein subunit | - |
| K426_RS02940 () | 571216..573009 | - | 1794 | WP_066553539.1 | assimilatory sulfite reductase (NADPH) flavoprotein subunit | - |
| K426_RS02945 () | 573178..573666 | - | 489 | WP_066553541.1 | dioxygenase | - |
| K426_RS02950 () | 573685..574533 | - | 849 | WP_066553543.1 | HTH-type transcriptional regulator GltC | VF |
| K426_RS02955 () | 574733..575374 | + | 642 | WP_066553545.1 | peroxiredoxin | - |
| K426_RS02960 () | 575371..576051 | + | 681 | WP_066553548.1 | carbonic anhydrase | - |
| K426_RS02965 () | 576048..576473 | + | 426 | WP_145907162.1 | hypothetical protein | - |
| K426_RS02970 () | 576475..577164 | + | 690 | WP_066553554.1 | Superoxide dismutase [Fe] | VF |
| K426_RS02975 () | 577193..577438 | + | 246 | WP_066553557.1 | hypothetical protein | - |
| K426_RS02980 () | 577679..578092 | + | 414 | WP_066553560.1 | nucleoside diphosphate kinase regulator | - |
| K426_RS02985 () | 578153..578599 | + | 447 | WP_066561269.1 | Rrf2 family transcriptional regulator | - |
| K426_RS02990 () | 578730..579815 | + | 1086 | WP_066553562.1 | multicopper oxidase domain-containing protein | - |
| K426_RS02995 () | 579828..580538 | + | 711 | WP_066553564.1 | cytochrome C | - |
| K426_RS03000 () | 580538..580927 | + | 390 | WP_066553566.1 | cytochrome c | - |
| K426_RS03005 () | 580955..581878 | + | 924 | WP_066553568.1 | multicopper oxidase domain-containing protein | - |
| K426_RS03010 () | 582035..584272 | + | 2238 | WP_066561272.1 | TonB-dependent receptor | - |
| K426_RS03015 () | 584293..585507 | + | 1215 | WP_066553570.1 | 5-aminolevulinate synthase | VF |
| K426_RS03020 () | 585549..586109 | + | 561 | WP_066553573.1 | hemerythrin domain-containing protein | - |
| K426_RS03025 () | 586360..588006 | + | 1647 | WP_066553575.1 | cytochrome-c oxidase, cbb3-type subunit I | - |
| K426_RS03030 () | 588013..588738 | + | 726 | WP_066553578.1 | cytochrome-c oxidase, cbb3-type subunit II | - |
| K426_RS03035 () | 588743..588913 | + | 171 | WP_066553581.1 | cbb3-type cytochrome c oxidase subunit 3 | - |
| K426_RS03040 () | 588904..589785 | + | 882 | WP_066553584.1 | cytochrome-c oxidase, cbb3-type subunit III | - |
| K426_RS03045 () | 589785..589970 | + | 186 | WP_066553587.1 | hypothetical protein | - |
| K426_RS03050 () | 589989..590771 | + | 783 | WP_066561275.1 | DUF2189 domain-containing protein | - |
| K426_RS03055 () | 590827..590979 | + | 153 | WP_066553590.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| K426_RS03060 () | 591031..591495 | + | 465 | WP_066553593.1 | hypothetical protein | - |
| K426_RS03065 () | 591489..592688 | + | 1200 | WP_066553595.1 | NnrS family protein | - |
| K426_RS03070 () | 592754..593452 | - | 699 | WP_158511722.1 | Phosphatidylglycerophosphatase B | VF |
| K426_RS30110 () | 593446..593725 | + | 280 | Protein_614 | hypothetical protein | - |
| K426_RS03075 () | 593782..594168 | - | 387 | WP_066561278.1 | DUF302 domain-containing protein | - |
| K426_RS03080 () | 594333..595589 | + | 1257 | WP_021243113.1 | IS701 family transposase ISNha2 | Transposase |
| K426_RS30115 () | 595722..596000 | + | 279 | WP_082748385.1 | hypothetical protein | - |
| K426_RS30120 () | 596056..596837 | + | 782 | Protein_618 | IS5 family transposase ISPbe2 | Transposase |
| K426_RS03095 () | 596925..598142 | - | 1218 | WP_197672749.1 | MFS transporter | - |
| K426_RS03100 () | 598139..601240 | - | 3102 | WP_066553606.1 | efflux RND transporter permease subunit | - |
| K426_RS03105 () | 601245..602234 | - | 990 | WP_066553608.1 | hypothetical protein | - |
| K426_RS03110 () | 602231..603619 | - | 1389 | WP_066553612.1 | TolC family protein | - |
| K426_RS03115 () | 603616..604956 | - | 1341 | WP_066553614.1 | Sensor protein BasS | VF |
| K426_RS03120 () | 604953..605627 | - | 675 | WP_066553615.1 | Transcriptional regulatory protein CusR | VF |
| K426_RS03130 () | 606166..606753 | + | 588 | WP_066553617.1 | carboxymuconolactone decarboxylase family protein | - |
| K426_RS03135 () | 606788..607624 | + | 837 | WP_066553620.1 | NAD(P)-dependent oxidoreductase | - |
| K426_RS03140 () | 608067..608663 | + | 597 | WP_066553624.1 | TetR/AcrR family transcriptional regulator | - |
| K426_RS03145 () | 608660..609841 | + | 1182 | WP_066553627.1 | efflux RND transporter periplasmic adaptor subunit | - |
| K426_RS03150 () | 609852..611054 | + | 1203 | WP_066553630.1 | ABC transporter permease | - |
| K426_RS03155 () | 611047..611742 | + | 696 | WP_066553633.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| K426_RS03160 () | 611896..612900 | - | 1005 | WP_066561282.1 | rod shape-determining protein | - |
| K426_RS30125 () | 612989..613271 | - | 283 | Protein_632 | transposase | - |
| K426_RS03165 () | 613343..613825 | - | 483 | WP_066553640.1 | hypothetical protein | - |
| K426_RS03170 () | 613825..614652 | - | 828 | WP_066553644.1 | FAD:protein FMN transferase | - |
| K426_RS03175 () | 614655..615203 | - | 549 | WP_066553647.1 | FMN-binding protein | - |
| K426_RS03180 () | 615216..616133 | - | 918 | WP_066553655.1 | hypothetical protein | - |
| K426_RS03185 () | 616152..617513 | - | 1362 | WP_066553658.1 | hypothetical protein | - |
| K426_RS03190 () | 617822..618208 | + | 387 | WP_145907166.1 | hypothetical protein | - |
| K426_RS30130 () | 618436..618831 | + | 396 | WP_082748388.1 | copper homeostasis periplasmic binding protein CopC | - |
| K426_RS03195 () | 618834..619748 | + | 915 | WP_066553662.1 | copper homeostasis membrane protein CopD | - |
| K426_RS03200 () | 619830..620222 | - | 393 | WP_145907170.1 | MFS transporter | - |
| K426_RS03215 () | 620422..620937 | + | 516 | WP_082748390.1 | YnfA family protein | - |
| K426_RS03220 () | 621068..621559 | - | 492 | WP_082748392.1 | DUF2703 domain-containing protein | - |
| K426_RS03225 () | 621802..622257 | - | 456 | WP_066561284.1 | bacterioferritin | - |
| K426_RS03230 () | 622519..623601 | + | 1083 | WP_066553679.1 | site-2 protease family protein | - |
| K426_RS30135 () | 623751..624020 | + | 270 | WP_082748394.1 | universal stress protein | - |
| K426_RS03235 () | 623998..626070 | - | 2073 | WP_066561287.1 | TonB-dependent siderophore receptor | - |
| K426_RS03240 () | 626076..627257 | - | 1182 | WP_066553681.1 | PepSY domain-containing protein | - |
| K426_RS03245 () | 627392..629509 | + | 2118 | WP_066553683.1 | TonB-dependent siderophore receptor | - |
| K426_RS03250 () | 629535..629966 | + | 432 | WP_066553686.1 | hypothetical protein | - |
| K426_RS03255 () | 630120..630434 | - | 315 | WP_066561290.1 | TraR/DksA family transcriptional regulator | - |
| K426_RS03260 () | 630662..631495 | + | 834 | WP_197672750.1 | formate/nitrite transporter family protein | - |
| K426_RS03265 () | 631702..634056 | + | 2355 | WP_082748398.1 | heavy metal translocating P-type ATPase | - |
| K426_RS03270 () | 634053..634256 | + | 204 | WP_066553694.1 | DUF2933 domain-containing protein | - |
| K426_RS03275 () | 634253..634699 | + | 447 | WP_066553697.1 | IS607 family transposase ISChh1 | Transposase |
| K426_RS03280 () | 634660..635070 | + | 411 | WP_145907172.1 | hypothetical protein | - |
| K426_RS03285 () | 635148..636398 | + | 1251 | WP_066561293.1 | TolC family protein | - |
| K426_RS03290 () | 636395..637630 | + | 1236 | WP_066553703.1 | efflux RND transporter periplasmic adaptor subunit | - |
| K426_RS03295 () | 637627..640761 | + | 3135 | WP_066553706.1 | efflux RND transporter permease subunit | - |
| K426_RS03300 () | 640773..641129 | + | 357 | WP_082748748.1 | copper-binding protein | - |
| K426_RS03305 () | 641353..641568 | - | 216 | WP_066553710.1 | hypothetical protein | - |
| K426_RS03310 () | 641612..642748 | - | 1137 | WP_066553714.1 | cell division protein ZapE | - |
| K426_RS03315 () | 642841..643038 | - | 198 | WP_066553716.1 | hypothetical protein | - |
| K426_RS03320 () | 643207..643659 | - | 453 | WP_066553718.1 | GNAT family acetyltransferase | - |
| K426_RS03325 () | 643656..644093 | - | 438 | WP_066553720.1 | DUF983 domain-containing protein | - |
| K426_RS03330 () | 644140..645738 | - | 1599 | WP_066553723.1 | phosphoenolpyruvate carboxykinase | - |
| K426_RS31995 () | 645791..645970 | - | 180 | WP_162492909.1 | hypothetical protein | - |
| K426_RS03340 () | 646324..646644 | + | 321 | WP_066553728.1 | helix-turn-helix transcriptional regulator | - |
| K426_RS03345 () | 646647..648317 | + | 1671 | WP_066553731.1 | sulfate permease | - |
| K426_RS03350 () | 648402..649598 | + | 1197 | WP_066553738.1 | Beta-ketothiolase BktB | VF |
| K426_RS03355 () | 649609..650301 | + | 693 | WP_066553741.1 | DUF1275 family protein | - |
| K426_RS03360 () | 650294..650599 | + | 306 | WP_066553743.1 | alkylphosphonate utilization protein | - |
| K426_RS03365 () | 650761..651051 | + | 291 | WP_066553746.1 | DUF2282 domain-containing protein | - |
| K426_RS03370 () | 651083..651994 | + | 912 | WP_066553748.1 | DUF692 domain-containing protein | - |
| K426_RS03375 () | 651981..652754 | + | 774 | WP_066553754.1 | DNA-binding domain-containing protein | - |
| K426_RS03380 () | 652751..653209 | + | 459 | WP_066553757.1 | DoxX family protein | - |
| K426_RS03385 () | 653206..653730 | + | 525 | WP_066553760.1 | sigma-70 family RNA polymerase sigma factor | - |
| K426_RS03390 () | 653734..654414 | + | 681 | WP_066553763.1 | DUF1109 domain-containing protein | - |
| K426_RS03395 () | 654786..655949 | + | 1164 | WP_066553766.1 | FAD-dependent oxidoreductase | - |
| K426_RS03400 () | 656019..656588 | + | 570 | WP_066553771.1 | hypothetical protein | - |
| K426_RS03405 () | 656689..656922 | + | 234 | WP_197672751.1 | nitrate/nitrite transporter NrtS | - |
| K426_RS03410 () | 656923..657525 | + | 603 | WP_066553779.1 | sigma-70 family RNA polymerase sigma factor | - |
| K426_RS03415 () | 657528..657719 | + | 192 | WP_066553782.1 | hypothetical protein | - |
| K426_RS03420 () | 657777..659927 | + | 2151 | WP_066553785.1 | bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase | - |
| K426_RS31785 () | 660096..660266 | - | 171 | WP_158511723.1 | hypothetical protein | - |
| K426_RS03425 () | 660343..660765 | - | 423 | WP_066553788.1 | helix-turn-helix domain-containing protein | - |
| K426_RS03430 () | 660842..661237 | + | 396 | WP_066561301.1 | mercury transporter MerT | - |
| K426_RS03435 () | 661250..661579 | + | 330 | WP_066553791.1 | heavy-metal-associated domain-containing protein | - |
| K426_RS03440 () | 661584..661793 | + | 210 | WP_066553793.1 | mercury resistance system transport protein MerF | - |
| K426_RS03445 () | 661804..663228 | + | 1425 | WP_066553795.1 | mercury(II) reductase | - |
| K426_RS03450 () | 663299..663817 | + | 519 | WP_066553802.1 | redoxin domain-containing protein | - |
| K426_RS03455 () | 663957..664271 | + | 315 | WP_197672752.1 | heavy-metal-associated domain-containing protein | - |
| K426_RS03460 () | 664288..665199 | + | 912 | WP_197672753.1 | transporter | - |
| K426_RS03465 () | 665199..666188 | + | 990 | WP_197672754.1 | 6-bladed beta-propeller | - |
| K426_RS03470 () | 666565..667020 | - | 456 | WP_066553807.1 | CBS domain-containing protein | - |
| K426_RS03475 () | 667114..667554 | - | 441 | WP_082748401.1 | thioredoxin family protein | - |
| K426_RS03480 () | 667731..670766 | + | 3036 | WP_066561310.1 | TonB-dependent receptor | - |
| K426_RS03485 () | 670778..672046 | + | 1269 | WP_066561312.1 | nucleoside:proton symporter | - |
| K426_RS03490 () | 672049..672651 | + | 603 | WP_066553814.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| K426_RS03495 () | 672897..673550 | - | 654 | WP_066553816.1 | hypothetical protein | - |
| K426_RS03500 () | 674769..675344 | - | 576 | WP_066553818.1 | carboxymuconolactone decarboxylase family protein | - |
| K426_RS03505 () | 675373..675564 | - | 192 | WP_197672755.1 | tautomerase family protein | - |
| K426_RS03510 () | 675660..676277 | - | 618 | WP_145907174.1 | TetR/AcrR family transcriptional regulator | - |
| K426_RS03515 () | 676531..677529 | + | 999 | WP_066553823.1 | HTH-type transcriptional regulator CynR | VF |
| K426_RS03520 () | 677553..677789 | - | 237 | WP_066553826.1 | DUF2274 domain-containing protein | - |
| K426_RS03525 () | 677791..678936 | - | 1146 | WP_082748752.1 | Type IV secretion system protein virB10 | VF |
| K426_RS03530 () | 679050..680114 | - | 1065 | WP_066553835.1 | P-type conjugative transfer protein TrbG | - |
| K426_RS03535 () | 680111..680800 | - | 690 | WP_066553837.1 | conjugal transfer protein TrbF | - |
| K426_RS03540 () | 680803..682140 | - | 1338 | WP_066553839.1 | P-type conjugative transfer protein TrbL | - |
| K426_RS03545 () | 682143..682433 | - | 291 | WP_066553841.1 | putative entry exclusion protein TrbK-alt | - |
| K426_RS03550 () | 682443..683216 | - | 774 | WP_066553845.1 | P-type conjugative transfer protein TrbJ | - |
| K426_RS03555 () | 683213..685651 | - | 2439 | WP_066553847.1 | conjugal transfer protein TrbE | - |
| K426_RS03560 () | 685662..685943 | - | 282 | WP_066553851.1 | VirB3 family type IV secretion system protein | - |
| K426_RS03565 () | 685943..686275 | - | 333 | WP_066553853.1 | TrbC/VirB2 family protein | - |
| K426_RS03570 () | 686272..687258 | - | 987 | WP_066553855.1 | Type IV secretion system protein VirB11 | VF |
| K426_RS03575 () | 687622..687987 | + | 366 | WP_197672756.1 | helix-turn-helix domain-containing protein | - |
| K426_RS03580 () | 687977..689377 | + | 1401 | WP_082748403.1 | type II toxin-antitoxin system HipA family toxin | - |
| K426_RS03585 () | 689488..689931 | - | 444 | WP_066561318.1 | CopG family transcriptional regulator | - |
| K426_RS03590 () | 689937..691928 | - | 1992 | WP_066553857.1 | Conjugal transfer protein TraG | VF |
| K426_RS03595 () | 691953..693692 | - | 1740 | WP_066553858.1 | VirD2 family relaxase/mobilization nuclease | - |
| K426_RS03600 () | 693924..694628 | - | 705 | WP_066553860.1 | lytic transglycosylase domain-containing protein | - |
| K426_RS03605 () | 694633..694980 | - | 348 | WP_066553865.1 | DUF736 domain-containing protein | - |
| K426_RS03610 () | 695049..695606 | - | 558 | WP_066553868.1 | S26 family signal peptidase | - |
| K426_RS03615 () | 695603..696124 | - | 522 | WP_066553870.1 | DUF2840 domain-containing protein | - |
| K426_RS03620 () | 696228..697367 | - | 1140 | WP_066553878.1 | replication initiator protein A | - |
| K426_RS03625 () | 697387..697668 | - | 282 | WP_066561320.1 | helix-turn-helix domain-containing protein | - |
| K426_RS03630 () | 697806..698333 | - | 528 | WP_066553880.1 | DUF2285 domain-containing protein | - |
| K426_RS03635 () | 698686..698952 | - | 267 | WP_066561322.1 | DUF2285 domain-containing protein | - |
| K426_RS03640 () | 699073..699327 | - | 255 | WP_066553882.1 | helix-turn-helix transcriptional regulator | - |
| K426_RS03645 () | 699524..699850 | - | 327 | WP_066553885.1 | DUF736 domain-containing protein | - |
| K426_RS03650 () | 700427..700867 | - | 441 | WP_066553888.1 | hypothetical protein | - |
| K426_RS32075 () | 701009..701173 | - | 165 | WP_197672757.1 | hypothetical protein | - |
| K426_RS03655 () | 701536..701790 | + | 255 | WP_066553891.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| K426_RS03660 () | 701787..702053 | + | 267 | WP_066553894.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| K426_RS03665 () | 702319..703329 | + | 1011 | WP_066561324.1 | sodium:calcium antiporter | - |
| K426_RS03670 () | 703376..704302 | - | 927 | WP_066561327.1 | DUF2493 domain-containing protein | - |
| K426_RS03675 () | 704608..705642 | - | 1035 | WP_145907176.1 | toprim domain-containing protein | - |
| K426_RS03680 () | 705642..709955 | - | 4314 | WP_066553899.1 | strawberry notch family protein | - |
| K426_RS03685 () | 710145..710420 | + | 276 | WP_066553901.1 | HU family DNA-binding protein | - |
| K426_RS03690 () | 710463..711107 | - | 645 | WP_066561338.1 | antitoxin of toxin-antitoxin stability system | - |
| K426_RS03695 () | 711100..711516 | - | 417 | WP_066553904.1 | hypothetical protein | - |
| K426_RS03700 () | 711606..711824 | - | 219 | WP_066553909.1 | hypothetical protein | - |
| K426_RS03705 () | 711884..714025 | - | 2142 | WP_066553912.1 | ParB/RepB/Spo0J family partition protein | - |
| K426_RS03710 () | 714158..715351 | - | 1194 | WP_066553916.1 | hypothetical protein | - |
| K426_RS03715 () | 715578..718331 | + | 2754 | WP_066553919.1 | class I SAM-dependent DNA methyltransferase | - |
| K426_RS03720 () | 718414..718674 | + | 261 | WP_066561340.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| K426_RS03725 () | 718658..718978 | + | 321 | WP_066553922.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| K426_RS03730 () | 718975..721041 | + | 2067 | WP_066553927.1 | DEAD/DEAH box helicase | - |
| K426_RS03735 () | 721034..722230 | + | 1197 | WP_066553930.1 | GIY-YIG nuclease family protein | - |
| K426_RS03740 () | 722336..724153 | + | 1818 | WP_066553933.1 | AAA family ATPase | - |
| K426_RS03745 () | 724140..725930 | + | 1791 | WP_197672758.1 | ATP-dependent helicase | - |
| K426_RS03750 () | 725974..727569 | - | 1596 | WP_066553938.1 | hypothetical protein | - |
| K426_RS03755 () | 727678..728778 | - | 1101 | WP_066553944.1 | XRE family transcriptional regulator | - |
| K426_RS03760 () | 728805..729407 | - | 603 | WP_066553947.1 | hypothetical protein | - |
| K426_RS03770 () | 730172..730804 | + | 633 | WP_066553950.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| K426_RS03775 () | 730801..731751 | + | 951 | WP_066553953.1 | xanthine dehydrogenase family protein subunit M | - |
| K426_RS03780 () | 731755..733971 | + | 2217 | WP_066553954.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|