MGE detailed information
MGE type: Genomic_island MGE length: 9352 bp
Accession: NZ_AP026961 Location: 4125545..4134896 Organism: Escherichia coli strain EC20-72C-1 Replicon: chromosome
Accession: NZ_AP026961 Location: 4125545..4134896 Organism: Escherichia coli strain EC20-72C-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO975_RS20100 (4120706) | 4120706..4122007 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| OO975_RS20105 (4122123) | 4122123..4122461 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| OO975_RS20110 (4122437) | 4122437..4124134 | + | 1698 | WP_000068902.1 | protein-disulfide reductase DsbD | - |
| OO975_RS20115 (4124171) | 4124171..4124746 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| OO975_RS20125 (4125545) | 4125545..4127083 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| OO975_RS20130 (4127449) | 4127449..4128783 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| OO975_RS20135 (4128863) | 4128863..4131010 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| OO975_RS20140 (4131069) | 4131069..4132526 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| OO975_RS20145 (4132763) | 4132763..4134280 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| OO975_RS20150 (4134399) | 4134399..4134572 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| OO975_RS20155 (4134600) | 4134600..4134896 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| OO975_RS20160 (4135123) | 4135123..4135395 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| OO975_RS20165 (4135407) | 4135407..4135637 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| OO975_RS20170 (4135818) | 4135818..4137449 | + | 1632 | WP_001565376.1 | sensor histidine kinase | - |
| OO975_RS20175 (4137446) | 4137446..4138165 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.003 |