MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 102618 bp
Accession: NZ_AP026784 Location: 1..102618 Organism: Escherichia coli strain IPCEC31 Replicon: plasmid pIPCEC31_1
Accession: NZ_AP026784 Location: 1..102618 Organism: Escherichia coli strain IPCEC31 Replicon: plasmid pIPCEC31_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO978_RS23395 (589) | 589..1755 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| OO978_RS23400 (1755) | 1755..2726 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| OO978_RS23405 (3464) | 3464..4366 | + | 903 | WP_064766247.1 | DUF1281 domain-containing protein | - |
| OO978_RS23410 (4363) | 4363..4674 | + | 312 | WP_012615291.1 | hypothetical protein | - |
| OO978_RS23415 (4751) | 4751..5434 | + | 684 | WP_032181561.1 | DNA methylase | - |
| OO978_RS23420 (5435) | 5435..5656 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| OO978_RS23425 (5586) | 5586..6104 | + | 519 | WP_223349485.1 | DUF1380 family protein | - |
| OO978_RS23430 (6149) | 6149..6919 | + | 771 | WP_264824730.1 | hypothetical protein | - |
| OO978_RS23435 (7333) | 7333..7758 | + | 426 | WP_001546490.1 | antirestriction protein | - |
| OO978_RS23440 (7805) | 7805..8227 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| OO978_RS23445 (8224) | 8224..8415 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| OO978_RS23450 (8687) | 8687..8935 | - | 249 | WP_071781657.1 | hypothetical protein | - |
| OO978_RS23455 (9447) | 9447..9677 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| OO978_RS23460 (9729) | 9729..11090 | + | 1362 | WP_000199439.1 | DUF3560 domain-containing protein | - |
| OO978_RS23465 (11138) | 11138..11703 | + | 566 | Protein_15 | class I SAM-dependent methyltransferase | - |
| OO978_RS23470 (11729) | 11729..11941 | + | 213 | WP_001348622.1 | hypothetical protein | - |
| OO978_RS23475 (11854) | 11854..12111 | + | 258 | WP_023147917.1 | hypothetical protein | - |
| OO978_RS23480 (12351) | 12351..12557 | + | 207 | WP_000275856.1 | hypothetical protein | - |
| OO978_RS23485 (13235) | 13235..15136 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| OO978_RS23490 (15286) | 15286..15783 | + | 498 | WP_042039995.1 | single-stranded DNA-binding protein | - |
| OO978_RS23495 (15851) | 15851..16084 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| OO978_RS23500 (16112) | 16112..16309 | + | 198 | Protein_22 | hypothetical protein | - |
| OO978_RS23505 (16419) | 16419..19523 | + | 3105 | Protein_23 | Multifunctional conjugation protein TraI | Relaxase |
| OO978_RS23510 (19543) | 19543..20289 | + | 747 | WP_023149624.1 | conjugal transfer pilus acetylase TraX | - |
| OO978_RS23515 (20344) | 20344..20904 | + | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| OO978_RS23520 (21038) | 21038..21250 | + | 213 | WP_005012601.1 | hypothetical protein | - |
| OO978_RS23525 (21551) | 21551..21640 | - | 90 | Protein_27 | IS1 family transposase | - |
| OO978_RS23530 (21695) | 21695..22372 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| OO978_RS23535 (22372) | 22372..22719 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| OO978_RS23540 (22739) | 22739..24310 | + | 1572 | WP_023149734.1 | IS66 family transposase ISCro1 | Transposase |
| OO978_RS23545 (24348) | 24348..24964 | - | 617 | Protein_31 | IS1 family transposase IS1G | Transposase |
| OO978_RS23550 (25065) | 25065..25247 | + | 183 | WP_000968309.1 | hypothetical protein | - |
| - (25386) | 25386..25447 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (25386) | 25386..25447 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (25386) | 25386..25447 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (25386) | 25386..25447 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| OO978_RS23555 (25491) | 25491..25640 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| OO978_RS23560 (25924) | 25924..26181 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| OO978_RS23565 (26417) | 26417..26491 | + | 75 | WP_032336874.1 | RepA leader peptide Tap | - |
| OO978_RS23570 (26484) | 26484..26930 | + | 447 | Protein_36 | plasmid replication initiator RepA | - |
| OO978_RS23575 (26930) | 26930..27544 | - | 615 | Protein_37 | VENN motif pre-toxin domain-containing protein | - |
| OO978_RS23580 (28251) | 28251..29471 | + | 1221 | WP_000410951.1 | arginine deiminase | - |
| OO978_RS23585 (29482) | 29482..30393 | + | 912 | WP_000440183.1 | carbamate kinase | - |
| OO978_RS23590 (30478) | 30478..31482 | + | 1005 | WP_000154545.1 | Ornithine carbamoyltransferase | VF |
| OO978_RS23595 (31530) | 31530..32933 | + | 1404 | WP_000514417.1 | YfcC family protein | - |
| OO978_RS23600 (33014) | 33014..33493 | + | 480 | WP_001496175.1 | ArgR family transcriptional regulator | - |
| OO978_RS23605 (33557) | 33557..33898 | - | 342 | Protein_43 | transposase | - |
| OO978_RS23610 (33850) | 33850..34071 | - | 222 | WP_000080227.1 | IS66 family transposase ISEc43 | Transposase |
| OO978_RS23615 (34102) | 34102..34452 | - | 351 | WP_000624725.1 | IS66 family transposase ISEc47 | Transposase |
| OO978_RS23620 (34449) | 34449..34805 | - | 357 | WP_000229735.1 | IS66 family transposase ISEc23 | Transposase |
| OO978_RS23630 (35650) | 35650..36228 | + | 579 | WP_032152936.1 | DUF2726 domain-containing protein | - |
| OO978_RS23635 (36641) | 36641..36994 | - | 354 | WP_000005489.1 | hypothetical protein | - |
| OO978_RS23640 (37466) | 37466..38488 | - | 1023 | WP_000156883.1 | IS110 family transposase ISSm1 | Transposase |
| OO978_RS23645 (38893) | 38893..39150 | + | 258 | WP_000083821.1 | replication regulatory protein RepA | - |
| OO978_RS23650 (39385) | 39385..39459 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| OO978_RS23655 (39452) | 39452..40309 | + | 858 | WP_032152935.1 | incFII family plasmid replication initiator RepA | - |
| OO978_RS23660 (41248) | 41248..41901 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| OO978_RS23665 (41994) | 41994..42251 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| OO978_RS23670 (42184) | 42184..42585 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| OO978_RS23675 (42722) | 42722..45619 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| OO978_RS23680 (45714) | 45714..46319 | + | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| OO978_RS23685 (46343) | 46343..47092 | - | 750 | Protein_59 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| OO978_RS23690 (47096) | 47096..47488 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| OO978_RS23695 (47626) | 47626..48510 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| OO978_RS23700 (48542) | 48542..49741 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| OO978_RS23705 (49847) | 49847..50497 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| OO978_RS23710 (50529) | 50529..50771 | - | 243 | WP_032140899.1 | hypothetical protein | - |
| OO978_RS23715 (50813) | 50813..52327 | - | 1515 | Protein_65 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| OO978_RS23720 (52393) | 52393..53097 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| OO978_RS23725 (53241) | 53241..53795 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| OO978_RS23730 (53926) | 53926..54756 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| OO978_RS23735 (54894) | 54894..55334 | + | 441 | Protein_69 | CatB-related O-acetyltransferase | - |
| OO978_RS23740 (55388) | 55388..56092 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| OO978_RS23745 (56158) | 56158..56445 | + | 288 | Protein_71 | IS1380 family transposase ISEcp1 | Transposase |
| OO978_RS23750 (56701) | 56701..57576 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| OO978_RS23755 (57623) | 57623..57955 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| OO978_RS23760 (57981) | 57981..60200 | + | 2220 | Protein_74 | Tn3 family transposase TnpA_Tn3 | Transposase |
| OO978_RS23765 (60277) | 60277..60981 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| OO978_RS23770 (60975) | 60975..61113 | - | 139 | Protein_76 | recombinase family protein | - |
| OO978_RS23775 (61239) | 61239..61589 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| OO978_RS23780 (61792) | 61792..62805 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| OO978_RS23785 (62963) | 62963..63436 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| OO978_RS23790 (63567) | 63567..64355 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| OO978_RS23795 (64561) | 64561..64908 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| OO978_RS23800 (64902) | 64902..65741 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| OO978_RS23805 (65869) | 65869..66072 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| OO978_RS23810 (66228) | 66228..67433 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| OO978_RS23815 (67444) | 67444..67749 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| OO978_RS23820 (67793) | 67793..67858 | + | 66 | Protein_86 | EAL domain-containing protein | - |
| OO978_RS23825 (67976) | 67976..68740 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| OO978_RS23830 (69233) | 69233..69817 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| OO978_RS23835 (69817) | 69817..71055 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| OO978_RS23840 (71052) | 71052..71957 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| OO978_RS23845 (72079) | 72079..72783 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| OO978_RS23850 (73000) | 73000..74082 | - | 1083 | WP_250146735.1 | hypothetical protein | - |
| OO978_RS23855 (74449) | 74449..74637 | + | 189 | WP_001309252.1 | hypothetical protein | - |
| OO978_RS23860 (74758) | 74758..75498 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| OO978_RS23865 (75783) | 75783..76760 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| OO978_RS23870 (77506) | 77506..77829 | + | 324 | Protein_96 | IS21 family transposase IS21 | Transposase |
| OO978_RS23875 (77831) | 77831..77935 | + | 105 | Protein_97 | AAA family ATPase | - |
| OO978_RS23880 (77996) | 77996..78509 | + | 514 | Protein_98 | DUF4113 domain-containing protein | - |
| OO978_RS23890 (79742) | 79742..80656 | + | 915 | WP_000949005.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| OO978_RS23895 (80656) | 80656..81483 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| OO978_RS23900 (81480) | 81480..82337 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| OO978_RS23905 (82334) | 82334..83191 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| OO978_RS23910 (83425) | 83425..83682 | - | 258 | Protein_104 | transposase | - |
| OO978_RS23915 (83680) | 83680..84093 | + | 414 | Protein_105 | phosphopyruvate hydratase | - |
| OO978_RS23920 (84434) | 84434..84814 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| OO978_RS23925 (85194) | 85194..86387 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| OO978_RS23930 (86523) | 86523..88247 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| OO978_RS23935 (88248) | 88248..89195 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| OO978_RS23940 (89195) | 89195..90937 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| OO978_RS23945 (90934) | 90934..92267 | + | 1334 | Protein_111 | L-lysine N6-monooxygenase | VF |
| OO978_RS23950 (92293) | 92293..94494 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| OO978_RS23955 (95020) | 95020..95295 | + | 276 | WP_000179213.1 | IS1-like element transposase | - |
| OO978_RS23960 (95317) | 95317..95706 | + | 390 | WP_071999143.1 | IS1 family transposase IS1S | Transposase |
| OO978_RS23965 (95960) | 95960..96982 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| OO978_RS23970 (96967) | 96967..98532 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| OO978_RS23975 (98607) | 98607..99023 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| OO978_RS23980 (99020) | 99020..99250 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| OO978_RS23985 (99810) | 99810..100028 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| OO978_RS23990 (100030) | 100030..100335 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | - |
| OO978_RS23995 (100336) | 100336..101142 | + | 807 | WP_000016970.1 | site-specific integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|