MGE detailed information
MGE type: Genomic_island MGE length: 10397 bp
Accession: NZ_AP025546 Location: 4172758..4183154 Organism: Escherichia coli strain LR-06 Replicon: chromosome
Accession: NZ_AP025546 Location: 4172758..4183154 Organism: Escherichia coli strain LR-06 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE22_RS20485 (4168187) | 4168187..4169488 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| QUE22_RS20490 (4169604) | 4169604..4169942 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| QUE22_RS20495 (4169918) | 4169918..4171615 | + | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| QUE22_RS20500 (4171652) | 4171652..4172227 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| QUE22_RS20515 (4173803) | 4173803..4175341 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| QUE22_RS20520 (4175707) | 4175707..4177041 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| QUE22_RS20525 (4177121) | 4177121..4179268 | + | 2148 | WP_286329305.1 | lysine decarboxylase CadA | - |
| QUE22_RS20530 (4179327) | 4179327..4180784 | + | 1458 | WP_094304342.1 | dipeptide/tripeptide permease DtpC | - |
| QUE22_RS20535 (4181021) | 4181021..4182538 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| QUE22_RS20540 (4182657) | 4182657..4182830 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| QUE22_RS20545 (4182858) | 4182858..4183154 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| QUE22_RS20550 (4183381) | 4183381..4183653 | - | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| QUE22_RS20555 (4183665) | 4183665..4183895 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| QUE22_RS20560 (4184076) | 4184076..4185707 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| QUE22_RS20565 (4185704) | 4185704..4186423 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.006 |