MGE detailed information
MGE type: Mobilizable plasmid MGE length: 83929 bp
Accession: NZ_AP025216 Location: 1..83929 Organism: Escherichia coli strain 2017.09.02CC Replicon: plasmid p20170902CC-2
Accession: NZ_AP025216 Location: 1..83929 Organism: Escherichia coli strain 2017.09.02CC Replicon: plasmid p20170902CC-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH32_RS23350 | 2..874 | + | 873 | Protein_0 | IS3 family transposase ISEc31 | Transposase |
| LPH32_RS23355 (VEGS19_44540) | 893..1204 | + | 312 | Protein_1 | IS3 family transposase | - |
| LPH32_RS23360 (VEGS19_44550) | 1266..1511 | + | 246 | Protein_2 | IS91 family transposase | - |
| LPH32_RS23365 (VEGS19_44560) | 2095..5610 | + | 3516 | WP_077491875.1 | Outer membrane protein IcsA autotransporter | VF |
| LPH32_RS23370 | 5785..5990 | - | 206 | Protein_4 | hypothetical protein | - |
| LPH32_RS23375 | 5989..6102 | + | 114 | Protein_5 | alkaline phosphatase | - |
| LPH32_RS23380 (VEGS19_44580) | 6470..6757 | - | 288 | WP_000222771.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LPH32_RS23385 (VEGS19_44590) | 6754..7005 | - | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LPH32_RS23390 (VEGS19_44600) | 7688..8119 | - | 432 | Protein_8 | IncHI-type conjugal transfer protein TrhH | - |
| LPH32_RS23395 (VEGS19_44610) | 8109..8531 | - | 423 | WP_001352023.1 | conjugal transfer protein TraF | - |
| LPH32_RS23400 (VEGS19_44620) | 8482..9156 | - | 675 | WP_001352022.1 | conjugal transfer protein TraF | - |
| LPH32_RS23405 (VEGS19_44630) | 9943..10281 | - | 339 | WP_223656872.1 | hypothetical protein | - |
| LPH32_RS23410 (VEGS19_44640) | 10284..10814 | - | 531 | WP_229436842.1 | hypothetical protein | - |
| LPH32_RS23415 (VEGS19_44650) | 11883..12368 | + | 486 | WP_000071636.1 | conjugative transfer protein MobI(A/C) | - |
| LPH32_RS23420 (VEGS19_44660) | 12365..13087 | + | 723 | WP_000133024.1 | hypothetical protein | - |
| LPH32_RS23425 (VEGS19_44670) | 13098..14729 | + | 1632 | WP_229436851.1 | hypothetical protein | Relaxase |
| LPH32_RS23435 (VEGS19_44710) | 15856..16353 | - | 498 | WP_000148192.1 | hypothetical protein | - |
| LPH32_RS23440 | 16530..17227 | + | 698 | WP_108933438.1 | IS1 family transposase | - |
| LPH32_RS23445 (VEGS19_44740) | 17359..18303 | + | 945 | Protein_19 | IS66 family transposase ISEc8 | Transposase |
| LPH32_RS23450 | 18343..18420 | + | 78 | Protein_20 | DUF6404 family protein | - |
| LPH32_RS23455 (VEGS19_44750) | 18542..19900 | - | 1359 | WP_000823236.1 | esterase-like activity of phytase family protein | - |
| LPH32_RS23460 | 20182..20313 | + | 132 | Protein_22 | IS3 family transposase | - |
| LPH32_RS23465 | 20608..21305 | + | 698 | WP_108933436.1 | IS1 family transposase | - |
| LPH32_RS23470 (VEGS19_44790) | 21448..21912 | + | 465 | WP_001352013.1 | helix-turn-helix transcriptional regulator | - |
| LPH32_RS23475 (VEGS19_44800) | 22082..22960 | + | 879 | WP_227924839.1 | hypothetical protein | - |
| LPH32_RS23485 (VEGS19_44830) | 23872..25080 | - | 1209 | Protein_27 | hypothetical protein | - |
| LPH32_RS23490 (VEGS19_44840) | 25306..26307 | - | 1002 | WP_000038866.1 | ParB family protein | - |
| LPH32_RS23495 (VEGS19_44850) | 26324..27520 | - | 1197 | WP_001285362.1 | AAA family ATPase | - |
| LPH32_RS23500 (VEGS19_44860) | 27689..28498 | - | 810 | WP_001154682.1 | GIY-YIG nuclease family protein | - |
| LPH32_RS23505 (VEGS19_44870) | 28791..29675 | - | 885 | WP_001113742.1 | RepB family plasmid replication initiator protein | - |
| LPH32_RS23510 (VEGS19_44880) | 30011..30403 | - | 393 | WP_001281115.1 | hypothetical protein | - |
| LPH32_RS23515 | 30413..30553 | - | 141 | WP_000336812.1 | hypothetical protein | - |
| LPH32_RS23520 (VEGS19_44890) | 30579..31001 | - | 423 | WP_000007763.1 | hypothetical protein | - |
| LPH32_RS23525 (VEGS19_44900) | 31041..31829 | - | 789 | WP_000890209.1 | hypothetical protein | - |
| LPH32_RS23530 | 32004..32701 | + | 698 | WP_227474595.1 | IS1 family transposase | - |
| LPH32_RS23535 (VEGS19_44930) | 32717..33343 | + | 627 | Protein_37 | cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB | - |
| LPH32_RS23540 (VEGS19_44940) | 33470..34204 | + | 735 | WP_000578338.1 | helix-turn-helix domain-containing protein | - |
| LPH32_RS23545 | 34313..35010 | + | 698 | WP_229436323.1 | IS1 family transposase | - |
| LPH32_RS23550 (VEGS19_44970) | 35026..35454 | + | 429 | Protein_40 | metallophosphoesterase | - |
| LPH32_RS23555 (VEGS19_44980) | 35518..36222 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LPH32_RS23560 | 36274..36888 | + | 615 | Protein_42 | hypothetical protein | - |
| LPH32_RS23565 (VEGS19_45010) | 37190..38452 | + | 1263 | WP_069067570.1 | hypothetical protein | - |
| LPH32_RS23570 (VEGS19_45020) | 38525..38851 | + | 327 | Protein_44 | hypothetical protein | - |
| LPH32_RS23580 (VEGS19_45050) | 39830..40051 | + | 222 | WP_001190711.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LPH32_RS23585 (VEGS19_45060) | 40051..40431 | + | 381 | WP_001216039.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LPH32_RS23590 (VEGS19_45070) | 40436..40615 | + | 180 | WP_000113018.1 | hypothetical protein | - |
| LPH32_RS23595 (VEGS19_45080) | 40643..41686 | + | 1044 | WP_069067567.1 | DUF968 domain-containing protein | - |
| LPH32_RS23600 (VEGS19_45100) | 41902..42300 | + | 399 | WP_229436862.1 | phage antirepressor KilAC domain-containing protein | - |
| LPH32_RS23605 (VEGS19_45110) | 42333..43184 | - | 852 | WP_000611661.1 | phage repressor protein C1 | - |
| LPH32_RS23610 (VEGS19_45120) | 43295..43504 | - | 210 | WP_000874156.1 | hypothetical protein | - |
| LPH32_RS23615 (VEGS19_45130) | 44109..44330 | + | 222 | WP_000542338.1 | hypothetical protein | - |
| LPH32_RS23620 (VEGS19_45140) | 44338..45369 | + | 1032 | WP_000067537.1 | site-specific integrase | - |
| LPH32_RS23625 (VEGS19_45150) | 45420..45731 | + | 312 | WP_001224232.1 | hypothetical protein | - |
| LPH32_RS23630 (VEGS19_45160) | 45977..46537 | + | 561 | WP_000848370.1 | Ref family protein | - |
| LPH32_RS23635 (VEGS19_45170) | 46624..47373 | + | 750 | WP_000207077.1 | DUF4145 domain-containing protein | - |
| LPH32_RS23640 (VEGS19_45180) | 47529..48170 | + | 642 | WP_001351995.1 | hypothetical protein | - |
| LPH32_RS23645 (VEGS19_45190) | 48411..50162 | - | 1752 | Protein_59 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LPH32_RS23650 | 50166..50558 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| LPH32_RS23655 (VEGS19_45210) | 50696..51580 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| LPH32_RS23660 (VEGS19_45220) | 51612..52811 | - | 1200 | WP_001493765.1 | Tetracycline resistance protein, class C | ARG |
| LPH32_RS23665 (VEGS19_45230) | 52917..53567 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LPH32_RS23670 (VEGS19_45240) | 53599..53841 | - | 243 | WP_000844627.1 | transposase | - |
| LPH32_RS23675 (VEGS19_45250) | 54004..54549 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| LPH32_RS23680 (VEGS19_45260) | 54686..55258 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| LPH32_RS23685 (VEGS19_45270) | 55295..56686 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| LPH32_RS23690 (VEGS19_45280) | 56719..57147 | + | 429 | Protein_68 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LPH32_RS23695 (VEGS19_45290) | 57466..58122 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| LPH32_RS23700 | 58517..59133 | + | 617 | Protein_70 | transposase | - |
| LPH32_RS23705 (VEGS19_45320) | 59200..59904 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LPH32_RS23710 (VEGS19_45330) | 59850..60962 | - | 1113 | WP_024166810.1 | IS91 family transposase ISAzo26 | Transposase |
| LPH32_RS23715 (VEGS19_45340) | 61118..61591 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| LPH32_RS23720 (VEGS19_45350) | 61838..62542 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LPH32_RS23725 (VEGS19_45370) | 63008..66013 | - | 3006 | WP_229436833.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LPH32_RS23730 (VEGS19_45380) | 66175..66732 | + | 558 | WP_001217881.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LPH32_RS23735 (VEGS19_45390) | 66915..67775 | + | 861 | WP_015058868.1 | Beta-lactamase TEM | ARG |
| LPH32_RS23740 (VEGS19_45400) | 67937..68752 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LPH32_RS23745 (VEGS19_45410) | 68813..69616 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LPH32_RS23750 (VEGS19_45420) | 69616..70452 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LPH32_RS23755 (VEGS19_45430) | 70758..70998 | + | 241 | Protein_81 | relaxase | - |
| LPH32_RS23760 | 71030..71678 | - | 649 | Protein_82 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LPH32_RS23765 | 71784..72982 | + | 1199 | Protein_83 | tetracycline efflux MFS transporter Tet(A) | - |
| LPH32_RS23770 (VEGS19_45470) | 72949..73137 | - | 189 | Protein_84 | IS91 family transposase | - |
| LPH32_RS23775 (VEGS19_45480) | 73249..73554 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LPH32_RS23780 (VEGS19_45490) | 73582..74796 | - | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| LPH32_RS23785 (VEGS19_45500) | 75013..75897 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LPH32_RS23790 (VEGS19_45510) | 75928..77421 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LPH32_RS23795 (VEGS19_45520) | 77632..77856 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| LPH32_RS23800 (VEGS19_45530) | 77853..78590 | - | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LPH32_RS23805 | 79076..79216 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| LPH32_RS23810 (VEGS19_45540) | 79222..79926 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LPH32_RS23815 (VEGS19_45550) | 79951..80241 | + | 291 | WP_033557184.1 | hypothetical protein | - |
| LPH32_RS23820 (VEGS19_45560) | 80454..81458 | + | 1005 | WP_219359210.1 | RelA/SpoT domain-containing protein | - |
| LPH32_RS23825 (VEGS19_45570) | 81495..81743 | - | 249 | WP_000747845.1 | hypothetical protein | - |
| LPH32_RS23830 (VEGS19_45580) | 81740..82180 | - | 441 | WP_000224043.1 | hypothetical protein | - |
| LPH32_RS23835 (VEGS19_45600) | 82300..83462 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| LPH32_RS23840 (VEGS19_45610) | 83510..83914 | + | 405 | Protein_98 | IS1-like element IS1B family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|