MGE detailed information
MGE type: Genomic_island MGE length: 9357 bp
Accession: NZ_AP025209 Location: 4120509..4129865 Organism: Escherichia coli strain 2017.06.04CC Replicon: chromosome
Accession: NZ_AP025209 Location: 4120509..4129865 Organism: Escherichia coli strain 2017.06.04CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH28_RS20045 (4115670) | 4115670..4116971 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| LPH28_RS20050 (4117087) | 4117087..4117425 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| LPH28_RS20055 (4117401) | 4117401..4119098 | + | 1698 | WP_000068928.1 | protein-disulfide reductase DsbD | - |
| LPH28_RS20060 (4119135) | 4119135..4119710 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| LPH28_RS20070 (4120509) | 4120509..4122047 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| LPH28_RS20075 (4122413) | 4122413..4123747 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| LPH28_RS20080 (4123827) | 4123827..4125974 | + | 2148 | WP_112952107.1 | lysine decarboxylase CadA | - |
| LPH28_RS20085 (4126033) | 4126033..4127490 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| LPH28_RS20090 (4127727) | 4127727..4129244 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| LPH28_RS20095 (4129368) | 4129368..4129541 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| LPH28_RS20100 (4129569) | 4129569..4129865 | - | 297 | WP_071886671.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| LPH28_RS20105 (4130092) | 4130092..4130364 | - | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| LPH28_RS20110 (4130376) | 4130376..4130606 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| LPH28_RS20115 (4130787) | 4130787..4132418 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| LPH28_RS20120 (4132415) | 4132415..4133134 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.005 |