MGE detailed information
MGE type: Conjugative plasmid MGE length: 100617 bp
Accession: NZ_AP024519 Location: 1..100617 Organism: Escherichia coli strain E148 Replicon: plasmid pE148-1
Accession: NZ_AP024519 Location: 1..100617 Organism: Escherichia coli strain E148 Replicon: plasmid pE148-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN98_RS24220 (566) | 566..799 | - | 234 | WP_000006030.1 | DUF905 family protein | - |
| LDN98_RS24225 (855) | 855..1394 | - | 540 | WP_009426937.1 | single-stranded DNA-binding protein | - |
| LDN98_RS24230 (1420) | 1420..1626 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| LDN98_RS24235 (1867) | 1867..2124 | - | 258 | WP_023147917.1 | hypothetical protein | - |
| LDN98_RS24240 (2276) | 2276..2839 | - | 564 | WP_021573165.1 | class I SAM-dependent methyltransferase | - |
| LDN98_RS24245 (2886) | 2886..4247 | - | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| LDN98_RS24250 (4299) | 4299..4529 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| LDN98_RS24255 (5567) | 5567..5758 | - | 192 | WP_001027519.1 | hypothetical protein | - |
| LDN98_RS24260 (5755) | 5755..6177 | - | 423 | WP_000271751.1 | DUF1380 family protein | - |
| LDN98_RS24265 (6224) | 6224..6649 | - | 426 | WP_001198927.1 | antirestriction protein | - |
| LDN98_RS24270 (7066) | 7066..7836 | - | 771 | WP_001006206.1 | hypothetical protein | - |
| LDN98_RS24275 (7881) | 7881..8348 | - | 468 | WP_023148244.1 | DUF1380 family protein | - |
| LDN98_RS24280 (8329) | 8329..8550 | - | 222 | WP_021573173.1 | hypothetical protein | - |
| LDN98_RS24285 (8551) | 8551..9234 | - | 684 | WP_000085936.1 | DNA methylase | - |
| LDN98_RS24290 (9311) | 9311..9604 | - | 294 | WP_072145986.1 | hypothetical protein | - |
| LDN98_RS24295 (9752) | 9752..10714 | + | 963 | WP_000959888.1 | plasmid segregation protein ParM | - |
| LDN98_RS24300 (10717) | 10717..11067 | + | 351 | WP_000361385.1 | plasmid partitioning/stability family protein | - |
| LDN98_RS24305 (11218) | 11218..11730 | - | 513 | WP_001027529.1 | hypothetical protein | - |
| LDN98_RS24310 (12171) | 12171..13706 | + | 1536 | WP_001282376.1 | pore-forming bacteriocin colicin B | - |
| LDN98_RS24315 (13724) | 13724..14251 | - | 528 | WP_021573172.1 | colicin B immunity protein | - |
| LDN98_RS24320 (14495) | 14495..15310 | + | 816 | WP_000449473.1 | lipid II-degrading bacteriocin colicin M | - |
| LDN98_RS24325 (15360) | 15360..15713 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| LDN98_RS24330 (15890) | 15890..16666 | - | 777 | WP_049254294.1 | site-specific integrase | - |
| LDN98_RS24335 (16668) | 16668..17081 | - | 414 | WP_000465043.1 | hypothetical protein | - |
| LDN98_RS24340 (17624) | 17624..18712 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| LDN98_RS24345 (18714) | 18714..20939 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| LDN98_RS24350 (20989) | 20989..21888 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| LDN98_RS24355 (21878) | 21878..22168 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| LDN98_RS24360 (22464) | 22464..22694 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LDN98_RS24365 (22691) | 22691..23107 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDN98_RS24370 (23269) | 23269..25407 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| LDN98_RS24375 (25761) | 25761..26018 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| LDN98_RS24380 (26018) | 26018..26608 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| LDN98_RS24385 (26871) | 26871..28427 | + | 1557 | WP_000818556.1 | AAA family ATPase | - |
| LDN98_RS24390 (28619) | 28619..29236 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| LDN98_RS24395 (29529) | 29529..30608 | - | 1080 | WP_001089727.1 | permease | - |
| LDN98_RS24400 (30713) | 30713..31036 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LDN98_RS24405 (31197) | 31197..31517 | + | 321 | Protein_38 | NAD(P)H-dependent oxidoreductase | - |
| LDN98_RS24410 (31570) | 31570..32274 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| LDN98_RS24415 (32615) | 32615..34294 | + | 1680 | WP_015648237.1 | DDE-type integrase/transposase/recombinase | - |
| LDN98_RS24420 (34297) | 34297..35289 | + | 993 | WP_001381192.1 | TniB family NTP-binding protein | - |
| LDN98_RS24425 (35258) | 35258..35758 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| LDN98_RS24430 (35886) | 35886..36725 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| LDN98_RS24435 (36719) | 36719..37066 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LDN98_RS24440 (37235) | 37235..37789 | - | 555 | WP_003159191.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib4 | - |
| LDN98_RS24445 (37928) | 37928..38380 | - | 453 | WP_001749986.1 | hypothetical protein | ARG |
| LDN98_RS24450 (38553) | 38553..39350 | + | 798 | Protein_47 | IS91 family transposase ISAzo26 | Transposase |
| LDN98_RS24455 (39403) | 39403..40107 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDN98_RS24460 (40172) | 40172..40789 | + | 618 | Protein_49 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LDN98_RS24465 (40847) | 40847..41089 | + | 243 | WP_000844627.1 | transposase | - |
| LDN98_RS24470 (41121) | 41121..41771 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LDN98_RS24475 (41877) | 41877..43076 | + | 1200 | WP_000804064.1 | tetracycline efflux MFS transporter Tet(A) | - |
| LDN98_RS24480 (43108) | 43108..43992 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| LDN98_RS24485 (44130) | 44130..44294 | - | 165 | WP_001442851.1 | isochorismatase family protein | - |
| LDN98_RS24490 (44534) | 44534..45739 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| LDN98_RS24495 (45750) | 45750..46055 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| LDN98_RS24500 (46099) | 46099..46164 | + | 66 | Protein_57 | EAL domain-containing protein | - |
| LDN98_RS24505 (46282) | 46282..46826 | + | 545 | Protein_58 | IS6 family transposase | - |
| LDN98_RS24510 (46945) | 46945..47133 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| LDN98_RS24515 (47143) | 47143..48342 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| LDN98_RS24520 (48512) | 48512..48733 | + | 222 | Protein_61 | transposase | - |
| LDN98_RS24525 (49226) | 49226..49810 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| LDN98_RS24530 (49810) | 49810..51048 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| LDN98_RS24535 (51045) | 51045..51950 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| LDN98_RS24540 (52072) | 52072..52776 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| LDN98_RS24545 (53362) | 53362..53706 | + | 345 | WP_000793307.1 | hypothetical protein | - |
| LDN98_RS24550 (53882) | 53882..54883 | - | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| LDN98_RS24555 (55328) | 55328..55516 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| LDN98_RS24560 (55526) | 55526..56725 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| LDN98_RS24565 (56892) | 56892..57098 | - | 207 | Protein_70 | type II toxin-antitoxin system toxin YacB | - |
| LDN98_RS24570 (57098) | 57098..57367 | - | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | - |
| LDN98_RS24575 (58281) | 58281..59138 | - | 858 | WP_000130961.1 | incFII family plasmid replication initiator RepA | - |
| LDN98_RS24585 (59157) | 59157..59335 | - | 179 | Protein_73 | protein CopA/IncA | - |
| LDN98_RS24590 (59429) | 59429..59689 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| LDN98_RS24595 (59928) | 59928..60501 | - | 574 | Protein_75 | DUF2726 domain-containing protein | - |
| LDN98_RS24600 (60539) | 60539..60748 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| LDN98_RS24605 (60794) | 60794..61255 | - | 462 | WP_001233871.1 | thermonuclease family protein | - |
| LDN98_RS24610 (61498) | 61498..61710 | - | 213 | WP_012311405.1 | hypothetical protein | - |
| LDN98_RS24615 (61848) | 61848..62408 | - | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| LDN98_RS24620 (62463) | 62463..63209 | - | 747 | WP_000205777.1 | conjugal transfer pilus acetylase TraX | - |
| LDN98_RS24625 (63229) | 63229..68499 | - | 5271 | WP_223951679.1 | Multifunctional conjugation protein TraI | Relaxase |
| LDN98_RS24630 (68499) | 68499..70706 | - | 2208 | WP_021573169.1 | type IV conjugative transfer system coupling protein TraD | - |
| LDN98_RS24635 (70958) | 70958..71689 | - | 732 | WP_203037262.1 | conjugal transfer complement resistance protein TraT | - |
| LDN98_RS24640 (71703) | 71703..72212 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| LDN98_RS24645 (72209) | 72209..75034 | - | 2826 | WP_001007030.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LDN98_RS24650 (75031) | 75031..76404 | - | 1374 | WP_001137358.1 | conjugal transfer pilus assembly protein TraH | - |
| LDN98_RS24655 (76404) | 76404..76766 | - | 363 | WP_010379880.1 | P-type conjugative transfer protein TrbJ | - |
| LDN98_RS24660 (76696) | 76696..77241 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LDN98_RS24665 (77228) | 77228..77512 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LDN98_RS24670 (77631) | 77631..77978 | - | 348 | WP_001287679.1 | conjugal transfer protein TrbA | - |
| LDN98_RS24675 (77994) | 77994..78737 | - | 744 | WP_001030390.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LDN98_RS24680 (78730) | 78730..78987 | - | 258 | WP_000864328.1 | conjugal transfer protein TrbE | - |
| LDN98_RS24685 (79013) | 79013..80821 | - | 1809 | WP_223951680.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LDN98_RS24690 (80818) | 80818..81456 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LDN98_RS24695 (81465) | 81465..82457 | - | 993 | WP_000830854.1 | conjugal transfer pilus assembly protein TraU | - |
| LDN98_RS24700 (82454) | 82454..83086 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| LDN98_RS24705 (83083) | 83083..83469 | - | 387 | WP_000214097.1 | type-F conjugative transfer system protein TrbI | - |
| LDN98_RS24710 (83466) | 83466..86096 | - | 2631 | WP_223951681.1 | type IV secretion system protein TraC | - |
| LDN98_RS24715 (86223) | 86223..86570 | - | 348 | WP_000802783.1 | hypothetical protein | - |
| LDN98_RS24720 (86598) | 86598..86815 | - | 218 | Protein_100 | hypothetical protein | - |
| LDN98_RS24725 (86895) | 86895..87371 | - | 477 | WP_000549579.1 | hypothetical protein | - |
| LDN98_RS24730 (87364) | 87364..87585 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| LDN98_RS24735 (87720) | 87720..88235 | - | 516 | WP_000809874.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LDN98_RS24740 (88232) | 88232..88552 | - | 321 | WP_001057307.1 | conjugal transfer protein TrbD | - |
| LDN98_RS24745 (88539) | 88539..89129 | - | 591 | WP_000002784.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LDN98_RS24750 (89119) | 89119..90546 | - | 1428 | WP_000146657.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LDN98_RS24755 (90546) | 90546..91274 | - | 729 | WP_001230798.1 | type-F conjugative transfer system secretin TraK | - |
| LDN98_RS24760 (91261) | 91261..91827 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| LDN98_RS24765 (91849) | 91849..92160 | - | 312 | WP_000012103.1 | type IV conjugative transfer system protein TraL | - |
| LDN98_RS24770 (92175) | 92175..92534 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| LDN98_RS24775 (92568) | 92568..92795 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| LDN98_RS24780 (92889) | 92889..93575 | - | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| LDN98_RS24785 (93766) | 93766..94149 | - | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LDN98_RS24790 (94426) | 94426..95073 | + | 648 | WP_000614934.1 | hypothetical protein | VF |
| LDN98_RS24795 (95370) | 95370..96191 | - | 822 | WP_021573168.1 | DUF932 domain-containing protein | - |
| LDN98_RS24800 (96308) | 96308..96595 | - | 288 | WP_000107538.1 | hypothetical protein | - |
| LDN98_RS24805 (96896) | 96896..97057 | + | 162 | Protein_117 | hypothetical protein | - |
| LDN98_RS24810 (97067) | 97067..97297 | - | 231 | WP_223951682.1 | hypothetical protein | - |
| LDN98_RS24815 (97517) | 97517..97642 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LDN98_RS24820 (97584) | 97584..97733 | - | 150 | Protein_120 | plasmid maintenance protein Mok | - |
| - (97719) | 97719..97943 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (97719) | 97719..97943 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (97719) | 97719..97943 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (97719) | 97719..97943 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| LDN98_RS24825 (97912) | 97912..98674 | - | 763 | Protein_121 | plasmid SOS inhibition protein A | - |
| LDN98_RS24830 (98671) | 98671..99105 | - | 435 | WP_000845930.1 | conjugation system SOS inhibitor PsiB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|