MGE detailed information
MGE type: Genomic_island MGE length: 8642 bp
Accession: NZ_AP023348 Location: 5839723..5848364 Organism: Pseudomonas sp. RtIB026 Replicon: chromosome
Accession: NZ_AP023348 Location: 5839723..5848364 Organism: Pseudomonas sp. RtIB026 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRtIB026_RS26245 () | 5835267..5836489 | + | 1223 | Protein_5146 | methyltransferase | - |
| PRtIB026_RS26250 () | 5836715..5837032 | - | 318 | WP_050703396.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| PRtIB026_RS26255 () | 5837026..5837385 | - | 360 | WP_203648620.1 | QacE family quaternary ammonium compound efflux SMR transporter | - |
| PRtIB026_RS26260 () | 5837913..5838491 | + | 579 | WP_203648623.1 | hypothetical protein | - |
| PRtIB026_RS26265 () | 5838501..5838707 | + | 207 | WP_023629980.1 | helix-turn-helix transcriptional regulator | - |
| PRtIB026_RS26270 () | 5838726..5839112 | + | 387 | WP_203648624.1 | hypothetical protein | - |
| PRtIB026_RS26275 () | 5839135..5839386 | + | 252 | WP_203648626.1 | hypothetical protein | - |
| PRtIB026_RS26285 () | 5839723..5841042 | + | 1320 | WP_203648628.1 | Prophage integrase IntA ; Integrase | Integrase |
| PRtIB026_RS26290 () | 5842069..5842767 | + | 699 | WP_203648630.1 | HNH endonuclease | - |
| PRtIB026_RS26295 () | 5842769..5843167 | + | 399 | WP_203648632.1 | hypothetical protein | - |
| PRtIB026_RS26300 () | 5843863..5845008 | + | 1146 | WP_203648634.1 | nitrite reductase, copper-containing | - |
| PRtIB026_RS26305 () | 5845086..5845298 | + | 213 | WP_203648636.1 | DUF3079 domain-containing protein | - |
| PRtIB026_RS26310 () | 5845378..5845626 | + | 249 | WP_203648638.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PRtIB026_RS26315 () | 5845637..5845984 | + | 348 | WP_186712059.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PRtIB026_RS26320 () | 5846187..5846600 | - | 414 | WP_203648640.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PRtIB026_RS26325 () | 5846618..5846809 | - | 192 | WP_050703388.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PRtIB026_RS26330 () | 5847339..5848364 | - | 1026 | WP_203646634.1 | IS110 family transposase ISAzvi4 | Transposase |
| PRtIB026_RS26335 () | 5848694..5849239 | - | 546 | WP_203648642.1 | HDIG domain-containing protein | - |
| PRtIB026_RS26340 () | 5849312..5850367 | - | 1056 | WP_203648644.1 | haloacid dehalogenase-like hydrolase | - |
| PRtIB026_RS26345 () | 5850615..5852006 | + | 1392 | WP_203648646.1 | L-cystine transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|