MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 32452 bp
Accession: NZ_AP023229 Location: 1..32452 Organism: Escherichia coli strain YJ3 Replicon: plasmid pYJ3-b
Accession: NZ_AP023229 Location: 1..32452 Organism: Escherichia coli strain YJ3 Replicon: plasmid pYJ3-b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS63_RS24365 () | 625..1533 | + | 909 | WP_001329500.1 | Type IV secretion system protein virB9 | VF |
| HXS63_RS24370 () | 1526..2635 | + | 1110 | WP_176489666.1 | Type IV secretion system protein virB10 | VF |
| HXS63_RS24375 () | 2637..3665 | + | 1029 | WP_000017223.1 | Type IV secretion system protein VirB11 | VF |
| HXS63_RS24380 () | 3652..5514 | + | 1863 | WP_000847105.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HXS63_RS24385 () | 5526..5945 | + | 420 | WP_000737408.1 | hypothetical protein | - |
| HXS63_RS24390 () | 5929..6234 | + | 306 | WP_000147046.1 | IncN plasmid KikA protein | - |
| HXS63_RS24395 () | 6240..6497 | + | 258 | WP_000726018.1 | hypothetical protein | - |
| HXS63_RS24400 () | 6611..6928 | + | 318 | WP_000623495.1 | hypothetical protein | - |
| HXS63_RS24405 () | 6925..7413 | + | 489 | WP_000779030.1 | thermonuclease family protein | - |
| HXS63_RS24410 () | 7424..7750 | + | 327 | WP_001020836.1 | hypothetical protein | - |
| HXS63_RS24415 () | 8017..8769 | + | 753 | WP_000988468.1 | hypothetical protein | - |
| HXS63_RS24420 () | 8842..9117 | + | 276 | WP_000109866.1 | hypothetical protein | - |
| HXS63_RS24425 () | 9128..9700 | + | 573 | WP_001198958.1 | hypothetical protein | - |
| HXS63_RS24430 () | 9705..11858 | + | 2154 | WP_086621295.1 | type IA DNA topoisomerase | - |
| HXS63_RS24435 () | 11855..12061 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| HXS63_RS24440 () | 12079..12543 | + | 465 | WP_001293134.1 | H-NS histone family protein | - |
| HXS63_RS24445 () | 14047..14694 | + | 648 | WP_000587671.1 | P-loop NTPase | - |
| HXS63_RS24450 () | 14769..15038 | + | 270 | WP_001086090.1 | hypothetical protein | - |
| HXS63_RS24455 () | 15199..16050 | + | 852 | WP_086621292.1 | DUF2806 domain-containing protein | - |
| HXS63_RS24460 () | 16214..16741 | - | 528 | WP_000577044.1 | DUF2726 domain-containing protein | - |
| HXS63_RS24465 () | 16877..17281 | - | 405 | WP_012421203.1 | hypothetical protein | - |
| HXS63_RS24470 () | 17294..18160 | - | 867 | WP_050427389.1 | replication initiation protein | - |
| HXS63_RS24475 () | 19575..20090 | + | 516 | WP_001025395.1 | J domain-containing protein | - |
| HXS63_RS24480 () | 20195..20737 | + | 543 | WP_001420167.1 | hypothetical protein | - |
| HXS63_RS24485 () | 20734..20985 | + | 252 | WP_086621303.1 | hypothetical protein | Toxin Detail |
| HXS63_RS24490 () | 20972..21199 | + | 228 | WP_000801440.1 | hypothetical protein | Antitoxin Detail |
| HXS63_RS24495 () | 21642..21941 | + | 300 | WP_142284800.1 | hypothetical protein | - |
| HXS63_RS24500 () | 22036..22386 | + | 351 | WP_063848416.1 | hypothetical protein | - |
| HXS63_RS24505 () | 22691..22939 | + | 249 | WP_000520549.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HXS63_RS24510 () | 22936..23283 | + | 348 | WP_000681613.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HXS63_RS24515 () | 23644..24147 | + | 504 | WP_024188971.1 | hypothetical protein | - |
| HXS63_RS24520 () | 24151..25380 | + | 1230 | WP_001329504.1 | hypothetical protein | Relaxase |
| HXS63_RS24525 () | 25457..25750 | + | 294 | WP_000134733.1 | LuxR family transcriptional regulator | - |
| HXS63_RS24530 () | 25747..25962 | + | 216 | WP_000760375.1 | EexN family lipoprotein | - |
| HXS63_RS24535 () | 26139..26315 | + | 177 | WP_000660496.1 | hypothetical protein | - |
| HXS63_RS24540 () | 26318..26938 | + | 621 | WP_074169730.1 | Type IV secretion system protein virB1 | VF |
| HXS63_RS24545 () | 27006..27278 | + | 273 | WP_001328551.1 | Type IV secretion system protein virB2 | VF |
| HXS63_RS24550 () | 27297..30044 | + | 2748 | WP_146972851.1 | Type IV secretion system protein virB4 | VF |
| HXS63_RS24555 () | 30056..30772 | + | 717 | WP_000832280.1 | type IV secretion system VirB5 protein | - |
| HXS63_RS24560 () | 30784..31878 | + | 1095 | WP_176489667.1 | type IV secretion system protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|