MGE detailed information
MGE type: Conjugative plasmid MGE length: 111171 bp
Accession: NZ_AP022534 Location: 1..111171 Organism: Escherichia coli strain THO-006 Replicon: plasmid pTHO-006-1
Accession: NZ_AP022534 Location: 1..111171 Organism: Escherichia coli strain THO-006 Replicon: plasmid pTHO-006-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF32_RS24185 () | 35..109 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| JLF32_RS24190 () | 102..959 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| JLF32_RS24195 () | 1697..1921 | + | 225 | Protein_2 | hypothetical protein | - |
| JLF32_RS24200 () | 2028..2291 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| JLF32_RS24205 () | 2281..2580 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JLF32_RS24210 () | 2616..3281 | - | 666 | WP_001535733.1 | hypothetical protein | - |
| JLF32_RS24215 () | 3851..4414 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| JLF32_RS24220 () | 4418..5149 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| JLF32_RS24225 () | 5146..5871 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| JLF32_RS24230 () | 5881..7071 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| JLF32_RS24235 () | 7052..7870 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| JLF32_RS24240 () | 7872..8759 | - | 888 | WP_032148417.1 | McbB family protein | - |
| JLF32_RS24245 () | 8786..8995 | - | 210 | WP_001535752.1 | microcin B17 | - |
| JLF32_RS24250 () | 9525..9977 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| JLF32_RS24255 () | 10380..10730 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| JLF32_RS24260 () | 10733..11695 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| JLF32_RS24265 () | 12231..13133 | + | 903 | WP_001386431.1 | DUF1281 domain-containing protein | - |
| JLF32_RS24270 () | 13130..13441 | + | 312 | WP_033562134.1 | hypothetical protein | - |
| JLF32_RS24275 () | 13518..14201 | + | 684 | WP_000085885.1 | DNA methylase | - |
| JLF32_RS24280 () | 14202..14423 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| JLF32_RS24285 () | 14437..14871 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| JLF32_RS24290 () | 14916..15686 | + | 771 | WP_001006242.1 | hypothetical protein | - |
| JLF32_RS24295 () | 16225..16527 | + | 303 | WP_072257078.1 | antirestriction protein | - |
| JLF32_RS24300 () | 16574..16996 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| JLF32_RS24305 () | 16993..17184 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| JLF32_RS24310 () | 17181..17354 | + | 174 | WP_001354025.1 | hypothetical protein | - |
| JLF32_RS24315 () | 18225..18455 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| JLF32_RS24320 () | 18507..19868 | + | 1362 | WP_000170696.1 | DUF3560 domain-containing protein | - |
| JLF32_RS24325 () | 19915..20478 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| JLF32_RS24330 () | 21351..21890 | + | 540 | WP_001530505.1 | single-stranded DNA-binding protein | - |
| JLF32_RS24335 () | 21952..22185 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| JLF32_RS24340 () | 22251..24209 | + | 1959 | WP_200924004.1 | ParB/RepB/Spo0J family partition protein | - |
| JLF32_RS24345 () | 24264..24698 | + | 435 | WP_000845923.1 | conjugation system SOS inhibitor PsiB | - |
| JLF32_RS24350 () | 24695..25414 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| JLF32_RS24355 () | 25426..25614 | - | 189 | WP_001336239.1 | hypothetical protein | - |
| - () | 25426..25650 | + | 225 | NuclAT_0 | - | - |
| - () | 25426..25650 | + | 225 | NuclAT_0 | - | - |
| - () | 25426..25650 | + | 225 | NuclAT_0 | - | - |
| - () | 25426..25650 | + | 225 | NuclAT_0 | - | - |
| JLF32_RS24360 () | 25694..25852 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JLF32_RS24365 () | 26146..26301 | + | 156 | WP_163034349.1 | hypothetical protein | - |
| JLF32_RS24370 () | 26299..26496 | - | 198 | Protein_37 | hypothetical protein | - |
| JLF32_RS24375 () | 26498..26785 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| JLF32_RS24380 () | 26905..27726 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| JLF32_RS24385 () | 28021..28662 | - | 642 | WP_166687685.1 | hypothetical protein | VF |
| JLF32_RS24390 () | 28944..29327 | + | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| JLF32_RS24395 () | 29514..30203 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| JLF32_RS24400 () | 30302..30697 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| JLF32_RS24405 () | 30730..31089 | + | 360 | WP_016239104.1 | type IV conjugative transfer system pilin TraA | - |
| JLF32_RS24410 () | 31104..31415 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| JLF32_RS24415 () | 31437..32003 | + | 567 | WP_016239103.1 | type IV conjugative transfer system protein TraE | - |
| JLF32_RS24420 () | 31990..32718 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JLF32_RS24425 () | 32718..34169 | + | 1452 | WP_016239102.1 | conjugal transfer protein TraB | - |
| JLF32_RS24430 () | 34138..34725 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| JLF32_RS24435 () | 34679..35029 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| JLF32_RS24440 () | 35029..35544 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JLF32_RS24445 () | 35679..35900 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| JLF32_RS24450 () | 35893..36306 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| JLF32_RS24455 () | 36299..36772 | + | 474 | WP_016249716.1 | hypothetical protein | - |
| JLF32_RS24460 () | 36853..37071 | + | 219 | WP_000556751.1 | hypothetical protein | - |
| JLF32_RS24465 () | 37099..37446 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| JLF32_RS24470 () | 37572..40202 | + | 2631 | WP_015075088.1 | type IV secretion system protein TraC | - |
| JLF32_RS24475 () | 40199..40585 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| JLF32_RS24480 () | 40582..41214 | + | 633 | WP_024220641.1 | type-F conjugative transfer system protein TraW | - |
| JLF32_RS24485 () | 41211..42203 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| JLF32_RS24490 () | 42233..42538 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| JLF32_RS24495 () | 42547..43185 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JLF32_RS24500 () | 43182..45032 | + | 1851 | WP_001570866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JLF32_RS24505 () | 45059..45316 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| JLF32_RS24510 () | 45309..46051 | + | 743 | Protein_65 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JLF32_RS24515 () | 46065..46406 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| JLF32_RS24520 () | 46387..46722 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| JLF32_RS24525 () | 46803..47087 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JLF32_RS24530 () | 47074..47619 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JLF32_RS24535 () | 47549..47896 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| JLF32_RS24540 () | 47844..48269 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| JLF32_RS24545 () | 48256..49629 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| JLF32_RS24550 () | 49626..52472 | + | 2847 | WP_050009856.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JLF32_RS24555 () | 52469..52978 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| JLF32_RS24560 () | 52992..53723 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| JLF32_RS24565 () | 53926..54705 | + | 780 | WP_021517375.1 | hypothetical protein | - |
| JLF32_RS24570 () | 54702..56917 | + | 2216 | Protein_77 | type IV conjugative transfer system coupling protein TraD | - |
| JLF32_RS24575 () | 56917..58179 | + | 1263 | Protein_78 | Multifunctional conjugation protein TraI | Relaxase |
| JLF32_RS24580 () | 58193..58357 | + | 165 | WP_042094446.1 | hypothetical protein | - |
| JLF32_RS24585 () | 58371..58805 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| JLF32_RS24590 () | 58850..59620 | + | 771 | WP_001006242.1 | hypothetical protein | - |
| JLF32_RS24595 () | 60159..60461 | + | 303 | WP_072257078.1 | antirestriction protein | - |
| JLF32_RS24600 () | 60508..60930 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| JLF32_RS24605 () | 60927..61118 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| JLF32_RS24610 () | 61115..61288 | + | 174 | WP_001354025.1 | hypothetical protein | - |
| JLF32_RS24615 () | 62159..62389 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| JLF32_RS24620 () | 62441..63580 | + | 1140 | Protein_87 | DUF3560 domain-containing protein | - |
| JLF32_RS24625 () | 63822..64385 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| JLF32_RS24630 () | 65252..65783 | + | 532 | Protein_89 | single-stranded DNA-binding protein | - |
| JLF32_RS24635 () | 65844..66075 | + | 232 | Protein_90 | DUF905 family protein | - |
| JLF32_RS24640 () | 66140..68086 | + | 1947 | Protein_91 | ParB/RepB/Spo0J family partition protein | - |
| JLF32_RS24645 () | 68141..68575 | + | 435 | WP_000845923.1 | conjugation system SOS inhibitor PsiB | - |
| JLF32_RS24650 () | 68572..69291 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| JLF32_RS24655 () | 69303..69491 | - | 189 | WP_001336239.1 | hypothetical protein | - |
| - () | 69303..69527 | + | 225 | NuclAT_1 | - | - |
| - () | 69303..69527 | + | 225 | NuclAT_1 | - | - |
| - () | 69303..69527 | + | 225 | NuclAT_1 | - | - |
| - () | 69303..69527 | + | 225 | NuclAT_1 | - | - |
| JLF32_RS24660 () | 69571..69729 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JLF32_RS24665 () | 70024..70179 | + | 156 | WP_163034349.1 | hypothetical protein | - |
| JLF32_RS24670 () | 70177..70374 | - | 198 | Protein_97 | hypothetical protein | - |
| JLF32_RS24675 () | 70376..70663 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| JLF32_RS24680 () | 70783..71604 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| JLF32_RS24685 () | 71899..72540 | - | 642 | WP_166687685.1 | hypothetical protein | VF |
| JLF32_RS24690 () | 72822..73205 | + | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| JLF32_RS24695 () | 73392..74081 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| JLF32_RS24700 () | 74180..74575 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| JLF32_RS24705 () | 74608..74967 | + | 360 | WP_016239104.1 | type IV conjugative transfer system pilin TraA | - |
| JLF32_RS24710 () | 74982..75293 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| JLF32_RS24715 () | 75315..75881 | + | 567 | WP_016239103.1 | type IV conjugative transfer system protein TraE | - |
| JLF32_RS24720 () | 75868..76596 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| JLF32_RS24725 () | 76596..78047 | + | 1452 | WP_016239102.1 | conjugal transfer protein TraB | - |
| JLF32_RS24730 () | 78016..78603 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| JLF32_RS24735 () | 78557..78907 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| JLF32_RS24740 () | 78907..79422 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JLF32_RS24745 () | 79557..79778 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| JLF32_RS24750 () | 79771..80184 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| JLF32_RS24755 () | 80177..80650 | + | 474 | WP_016249716.1 | hypothetical protein | - |
| JLF32_RS24760 () | 80731..80949 | + | 219 | WP_000556751.1 | hypothetical protein | - |
| JLF32_RS24765 () | 80977..81324 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| JLF32_RS24770 () | 81450..84080 | + | 2631 | WP_015075088.1 | type IV secretion system protein TraC | - |
| JLF32_RS24775 () | 84077..84463 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| JLF32_RS24780 () | 84460..85092 | + | 633 | WP_024220641.1 | type-F conjugative transfer system protein TraW | - |
| JLF32_RS24785 () | 85089..86081 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| JLF32_RS24790 () | 86111..86416 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| JLF32_RS24795 () | 86425..87063 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JLF32_RS24800 () | 87060..88910 | + | 1851 | WP_001570866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JLF32_RS24805 () | 88937..89194 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| JLF32_RS24810 () | 89187..89930 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JLF32_RS24815 () | 89944..90285 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| JLF32_RS24820 () | 90266..90601 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| JLF32_RS24825 () | 90682..90966 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JLF32_RS24830 () | 90953..91498 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JLF32_RS24835 () | 91428..91775 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| JLF32_RS24840 () | 91723..92148 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| JLF32_RS24845 () | 92135..93508 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| JLF32_RS24850 () | 93505..96351 | + | 2847 | WP_050009856.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JLF32_RS24855 () | 96348..96857 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| JLF32_RS24860 () | 96871..97602 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| JLF32_RS24865 () | 97805..98584 | + | 780 | WP_021517375.1 | hypothetical protein | - |
| JLF32_RS24870 () | 98581..100797 | + | 2217 | WP_096972265.1 | type IV conjugative transfer system coupling protein TraD | - |
| JLF32_RS24875 () | 100797..106067 | + | 5271 | WP_113367800.1 | Multifunctional conjugation protein TraI | Relaxase |
| JLF32_RS24880 () | 106087..106833 | + | 747 | WP_113318688.1 | conjugal transfer pilus acetylase TraX | - |
| JLF32_RS24885 () | 106888..107445 | + | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| JLF32_RS24890 () | 107597..107800 | + | 204 | WP_001336517.1 | hypothetical protein | - |
| JLF32_RS24895 () | 108542..109003 | + | 462 | WP_019842128.1 | thermonuclease family protein | - |
| JLF32_RS24900 () | 109106..109490 | + | 385 | Protein_143 | hypothetical protein | - |
| JLF32_RS24905 () | 109643..110080 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 110175..110231 | - | 57 | NuclAT_2 | - | Antitoxin Detail |
| - () | 110175..110231 | - | 57 | NuclAT_2 | - | Antitoxin Detail |
| - () | 110175..110231 | - | 57 | NuclAT_2 | - | Antitoxin Detail |
| - () | 110175..110231 | - | 57 | NuclAT_2 | - | Antitoxin Detail |
| JLF32_RS24910 () | 110279..110428 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JLF32_RS24915 () | 110713..110970 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|