MGE detailed information
MGE type: Genomic_island MGE length: 9943 bp
Accession: NZ_AP019411 Location: 5370371..5380313 Organism: Pseudomonas syringae pv. actinidiae strain MAFF613020 Replicon: chromosome
Accession: NZ_AP019411 Location: 5370371..5380313 Organism: Pseudomonas syringae pv. actinidiae strain MAFF613020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2494_RS23915 (KPSA1B_104872) | 5365801..5366283 | + | 483 | WP_003380358.1 | PAS domain-containing protein | - |
| M2494_RS23920 (KPSA1B_104873) | 5366379..5367635 | + | 1257 | WP_003380359.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| M2494_RS23925 | 5367700..5367936 | + | 237 | WP_003380360.1 | hypothetical protein | - |
| M2494_RS23930 (KPSA1B_104874) | 5368012..5368674 | - | 663 | WP_003380361.1 | ChrR family anti-sigma-E factor | - |
| M2494_RS23935 (KPSA1B_104875) | 5368674..5369186 | - | 513 | WP_003380362.1 | sigma-70 family RNA polymerase sigma factor | - |
| M2494_RS23940 | 5369422..5369610 | - | 189 | WP_003380363.1 | hypothetical protein | - |
| M2494_RS23945 (KPSA1B_104876) | 5369609..5370184 | + | 576 | WP_003380364.1 | hypothetical protein | - |
| M2494_RS23950 (KPSA1B_104877) | 5370371..5370775 | - | 405 | WP_003380365.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| M2494_RS23955 (KPSA1B_104878) | 5370775..5371005 | - | 231 | WP_003380366.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| M2494_RS23960 (KPSA1B_104879) | 5371120..5372001 | - | 882 | WP_003380368.1 | aldose 1-epimerase | - |
| M2494_RS23965 (KPSA1B_104880) | 5371976..5372947 | - | 972 | WP_003380370.1 | DMT family transporter | - |
| M2494_RS23970 (KPSA1B_104881) | 5373031..5374311 | - | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| M2494_RS23975 (KPSA1B_104882) | 5374312..5374839 | - | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| M2494_RS23980 (KPSA1B_104883) | 5374903..5375928 | - | 1026 | WP_003380375.1 | TRAP transporter substrate-binding protein | - |
| M2494_RS23985 (KPSA1B_104884) | 5375985..5376869 | - | 885 | WP_003380378.1 | hypothetical protein | VF |
| M2494_RS23990 (KPSA1B_104885) | 5376929..5377753 | - | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| M2494_RS23995 (KPSA1B_104886) | 5377932..5379200 | - | 1269 | WP_017698468.1 | OprD family porin | - |
| M2494_RS24000 (KPSA1B_104887) | 5379772..5380047 | - | 276 | WP_003382250.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M2494_RS24005 (KPSA1B_104888) | 5380047..5380313 | - | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| M2494_RS24010 (KPSA1B_104889) | 5380478..5382400 | - | 1923 | WP_017698469.1 | methyl-accepting chemotaxis protein | - |
| M2494_RS24015 (KPSA1B_104890) | 5382759..5384639 | + | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
| M2494_RS24020 (KPSA1B_104891) | 5384767..5385030 | - | 264 | WP_017683360.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|