MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 160294 bp
Accession: NZ_AP018682 Location: 1..160294 Organism: Vibrio casei strain DSM 22364 Replicon: plasmid 1
Accession: NZ_AP018682 Location: 1..160294 Organism: Vibrio casei strain DSM 22364 Replicon: plasmid 1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCASEI_RS18465 () | 297..1301 | - | 1005 | WP_089110680.1 | substrate-binding domain-containing protein | - |
| VCASEI_RS18470 () | 1478..4570 | - | 3093 | WP_089110681.1 | beta-galactosidase | - |
| VCASEI_RS18475 () | 5556..7673 | + | 2118 | WP_089110682.1 | alpha-galactosidase | - |
| VCASEI_RS18480 () | 8037..9410 | + | 1374 | WP_089110683.1 | melibiose:sodium transporter MelB | - |
| VCASEI_RS18485 () | 9486..10259 | - | 774 | Protein_4 | substrate-binding domain-containing protein | - |
| VCASEI_RS18490 () | 10326..10736 | - | 411 | WP_107928099.1 | IS200-IS605 family transposase ISAs26 | Transposase |
| VCASEI_RS18495 () | 10801..11979 | + | 1179 | WP_110957845.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| VCASEI_RS18500 () | 12063..12248 | - | 186 | Protein_7 | HTH-type transcriptional regulator GalR | VF |
| VCASEI_RS18505 () | 12560..13585 | + | 1026 | WP_110957846.1 | UDP-glucose 4-epimerase | VF |
| VCASEI_RS18510 () | 13594..14670 | + | 1077 | WP_110957847.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| VCASEI_RS18515 () | 14779..15945 | + | 1167 | WP_110957848.1 | galactokinase | - |
| VCASEI_RS18520 () | 15942..17018 | + | 1077 | WP_162621110.1 | galactose-1-epimerase | - |
| VCASEI_RS18525 () | 17580..18920 | - | 1341 | WP_110957849.1 | MFS transporter | - |
| VCASEI_RS18530 () | 18926..20425 | - | 1500 | WP_110957850.1 | signal transduction histidine-protein kinase/phosphatase UhpB | - |
| VCASEI_RS18535 () | 20425..21033 | - | 609 | WP_110957851.1 | Transcriptional regulatory protein UhpA | VF |
| VCASEI_RS18540 () | 21330..22727 | - | 1398 | WP_110957852.1 | Hexose-6-phosphate:phosphate antiporter | VF |
| VCASEI_RS18545 () | 23060..23781 | + | 722 | Protein_16 | IS3 family transposase | - |
| VCASEI_RS18550 () | 23842..24992 | + | 1151 | WP_110957783.1 | IS3 family transposase ISVal2 | Transposase |
| VCASEI_RS18555 () | 25032..26204 | + | 1173 | Protein_18 | heavy metal sensor histidine kinase | - |
| VCASEI_RS18560 () | 26255..27337 | - | 1083 | WP_006742744.1 | glycerol dehydrogenase | - |
| VCASEI_RS18565 () | 27691..28749 | + | 1059 | WP_027695153.1 | dihydroxyacetone kinase subunit DhaK | - |
| VCASEI_RS18570 () | 28765..29400 | + | 636 | WP_089111090.1 | dihydroxyacetone kinase ADP-binding subunit DhaL | - |
| VCASEI_RS18575 () | 29402..31801 | + | 2400 | WP_089111091.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| VCASEI_RS18580 () | 31880..33805 | - | 1926 | WP_027695155.1 | PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR | - |
| VCASEI_RS18585 () | 34020..35441 | + | 1422 | WP_110957853.1 | IS66 family transposase ISAs21 | Transposase |
| VCASEI_RS18590 () | 35876..37714 | + | 1839 | WP_110957854.1 | AAA family ATPase | - |
| VCASEI_RS18595 () | 37717..37935 | + | 219 | WP_197709620.1 | hypothetical protein | - |
| VCASEI_RS18600 () | 37988..39586 | - | 1599 | WP_110957756.1 | IS66 family transposase | - |
| VCASEI_RS18605 () | 39702..40028 | - | 327 | WP_004393962.1 | IS66 family transposase ISMno13 | Transposase |
| VCASEI_RS18610 () | 40025..40399 | - | 375 | WP_110957753.1 | hypothetical protein | - |
| VCASEI_RS18615 () | 40471..41595 | + | 1125 | Protein_30 | McrC family protein | - |
| VCASEI_RS18620 () | 41708..41962 | + | 255 | WP_110957855.1 | hypothetical protein | - |
| VCASEI_RS18625 () | 41978..43114 | + | 1137 | WP_110957856.1 | TIGR02584 family CRISPR-associated protein | - |
| VCASEI_RS18630 () | 43104..44378 | + | 1275 | WP_110957857.1 | ADP-ribosylglycohydrolase family protein | - |
| VCASEI_RS18635 () | 44381..45748 | + | 1368 | WP_110957858.1 | hypothetical protein | - |
| VCASEI_RS18640 () | 46185..47186 | + | 1002 | WP_110957886.1 | IS110 family transposase ISPa49 | Transposase |
| VCASEI_RS18645 () | 47849..48952 | + | 1104 | WP_110957859.1 | group II intron reverse transcriptase/maturase | - |
| VCASEI_RS18650 () | 49012..49386 | + | 375 | WP_110957753.1 | hypothetical protein | - |
| VCASEI_RS18655 () | 49383..49709 | + | 327 | WP_004393962.1 | IS66 family transposase ISMno13 | Transposase |
| VCASEI_RS18660 () | 49825..51423 | + | 1599 | WP_110957756.1 | IS66 family transposase | - |
| VCASEI_RS18665 () | 51498..51893 | + | 396 | Protein_40 | group II intron reverse transcriptase/maturase | - |
| VCASEI_RS18670 () | 52549..56544 | + | 3996 | Protein_41 | ATP-dependent RecD-like DNA helicase | VF |
| VCASEI_RS18675 () | 56603..57753 | + | 1151 | WP_110957751.1 | IS3 family transposase ISVisp3 | Transposase |
| VCASEI_RS18680 () | 57776..58732 | + | 957 | Protein_43 | DNA helicase | - |
| VCASEI_RS18685 () | 58738..60123 | + | 1386 | WP_110957860.1 | hypothetical protein | - |
| VCASEI_RS18690 () | 60389..60637 | - | 249 | WP_027695173.1 | hypothetical protein | - |
| VCASEI_RS18695 () | 61026..61400 | - | 375 | WP_038149449.1 | rhodanese-like domain-containing protein | - |
| VCASEI_RS18700 () | 61698..62618 | - | 921 | WP_089110871.1 | DeoR family transcriptional regulator | - |
| VCASEI_RS18705 () | 62581..63240 | - | 660 | WP_089110870.1 | deoxyribose-phosphate aldolase | - |
| VCASEI_RS18710 () | 63457..64386 | + | 930 | WP_089110869.1 | ribokinase | - |
| VCASEI_RS18715 () | 64470..65798 | + | 1329 | WP_089110868.1 | L-fucose:H+ symporter permease | - |
| VCASEI_RS18720 () | 65849..66865 | + | 1017 | WP_174208768.1 | aldose 1-epimerase family protein | - |
| VCASEI_RS18725 () | 66977..67407 | + | 431 | Protein_52 | DUF3387 domain-containing protein | - |
| VCASEI_RS18730 () | 67733..67948 | + | 216 | WP_110957861.1 | hypothetical protein | - |
| VCASEI_RS18735 () | 68077..69120 | + | 1044 | WP_089110866.1 | hypothetical protein | - |
| VCASEI_RS18740 () | 69148..69399 | + | 252 | WP_089110865.1 | hypothetical protein | - |
| VCASEI_RS18745 () | 69679..69951 | + | 273 | WP_089110864.1 | hypothetical protein | - |
| VCASEI_RS18750 () | 69974..70408 | + | 435 | WP_089110863.1 | hypothetical protein | - |
| VCASEI_RS18755 () | 70423..70845 | + | 423 | WP_089110862.1 | hypothetical protein | - |
| VCASEI_RS18760 () | 70975..72312 | + | 1338 | WP_089110861.1 | GlyGly-CTERM sorting domain-containing protein | - |
| VCASEI_RS18765 () | 72396..72725 | + | 330 | WP_089110860.1 | hypothetical protein | - |
| VCASEI_RS18770 () | 72879..73133 | + | 255 | WP_089110859.1 | hypothetical protein | - |
| VCASEI_RS18775 () | 73304..73690 | + | 387 | WP_089110858.1 | peptidase | - |
| VCASEI_RS18780 () | 73696..74961 | + | 1266 | WP_089110857.1 | Y-family DNA polymerase | - |
| VCASEI_RS18785 () | 75333..75905 | - | 573 | WP_089110856.1 | DUF2913 family protein | - |
| VCASEI_RS18790 () | 76045..76350 | + | 306 | WP_089110855.1 | hypothetical protein | - |
| VCASEI_RS19505 () | 76467..76631 | + | 165 | WP_162621111.1 | hypothetical protein | - |
| VCASEI_RS19510 () | 76635..76781 | + | 147 | WP_162621112.1 | hypothetical protein | - |
| VCASEI_RS18795 () | 77132..77413 | - | 282 | WP_089110854.1 | hypothetical protein | - |
| VCASEI_RS18800 () | 77481..77723 | - | 243 | WP_089110873.1 | hypothetical protein | - |
| VCASEI_RS18805 () | 78101..78622 | - | 522 | WP_089110853.1 | SAM-dependent methyltransferase | - |
| VCASEI_RS18810 () | 78616..78888 | - | 273 | WP_089110852.1 | hypothetical protein | - |
| VCASEI_RS18815 () | 78924..79166 | - | 243 | WP_089110851.1 | hypothetical protein | - |
| VCASEI_RS18820 () | 79223..79558 | - | 336 | WP_089110850.1 | hypothetical protein | - |
| VCASEI_RS18825 () | 79780..80037 | - | 258 | WP_089110849.1 | hypothetical protein | - |
| VCASEI_RS18830 () | 80055..81308 | - | 1254 | WP_089110848.1 | DGQHR domain-containing protein | - |
| VCASEI_RS19515 () | 81422..81595 | - | 174 | WP_162621113.1 | hypothetical protein | - |
| VCASEI_RS19520 () | 81692..82105 | + | 414 | WP_162621114.1 | hypothetical protein | - |
| VCASEI_RS18845 () | 82230..82571 | + | 342 | WP_089110845.1 | hypothetical protein | - |
| VCASEI_RS18850 () | 82799..85948 | + | 3150 | WP_089110844.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| VCASEI_RS18855 () | 86013..86501 | + | 489 | WP_110957862.1 | hypothetical protein | - |
| VCASEI_RS18860 () | 86504..86821 | + | 318 | WP_089110842.1 | hypothetical protein | - |
| VCASEI_RS18865 () | 86818..87399 | + | 582 | WP_089110841.1 | 3'-5' exonuclease | - |
| VCASEI_RS18870 () | 87613..87855 | - | 243 | WP_162621115.1 | hypothetical protein | - |
| VCASEI_RS18875 () | 87956..88582 | - | 627 | WP_089110839.1 | hypothetical protein | - |
| VCASEI_RS18880 () | 88800..89174 | + | 375 | WP_110957753.1 | hypothetical protein | - |
| VCASEI_RS18885 () | 89171..89497 | + | 327 | WP_004393962.1 | IS66 family transposase ISMno13 | Transposase |
| VCASEI_RS18890 () | 89613..91211 | + | 1599 | WP_102969847.1 | IS66 family transposase | - |
| VCASEI_RS18895 () | 91292..91828 | + | 537 | Protein_88 | IS66 family transposase ISVa11 | Transposase |
| VCASEI_RS18900 () | 92105..93115 | - | 1011 | WP_110957863.1 | LacI family transcriptional regulator | - |
| VCASEI_RS18905 () | 93177..94616 | - | 1440 | WP_110957864.1 | 6-phospho-beta-glucosidase | - |
| VCASEI_RS18910 () | 94750..96293 | - | 1544 | Protein_91 | IS3 family transposase ISGur6 | Transposase |
| VCASEI_RS18915 () | 96328..98145 | - | 1818 | WP_110957865.1 | glucose PTS transporter subunit IIA | - |
| VCASEI_RS18920 () | 98346..98557 | - | 212 | Protein_93 | transposase | - |
| VCASEI_RS18930 () | 99138..99382 | - | 245 | Protein_94 | IS5 family transposase ISVch5 | Transposase |
| VCASEI_RS18940 () | 99701..100606 | - | 906 | WP_110957867.1 | LysR family transcriptional regulator | - |
| VCASEI_RS18945 () | 100743..101162 | + | 420 | WP_110957868.1 | CidA/LrgA family protein | - |
| VCASEI_RS18950 () | 101163..101861 | + | 699 | WP_110957869.1 | LrgB family protein | - |
| VCASEI_RS19525 () | 102501..102677 | - | 177 | WP_162621116.1 | hypothetical protein | - |
| VCASEI_RS18955 () | 102792..103942 | + | 1151 | WP_110957751.1 | IS3 family transposase ISVisp3 | Transposase |
| VCASEI_RS18960 () | 104249..105310 | + | 1062 | WP_110957870.1 | tyrosine-type recombinase/integrase | - |
| VCASEI_RS18965 () | 105404..105643 | - | 240 | WP_110957871.1 | hypothetical protein | - |
| VCASEI_RS18970 () | 105795..106004 | - | 210 | WP_110957872.1 | BrnA antitoxin family protein | - |
| VCASEI_RS18975 () | 105997..106263 | - | 267 | WP_110957873.1 | BrnT family toxin | - |
| VCASEI_RS18980 () | 106285..106581 | - | 297 | WP_027695183.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCASEI_RS18985 () | 106568..106825 | - | 258 | WP_027695182.1 | antitoxin | Antitoxin Detail |
| VCASEI_RS18990 () | 107000..107904 | + | 905 | Protein_106 | IS3 family transposase ISVpa2 | Transposase |
| VCASEI_RS18995 () | 107935..109088 | - | 1154 | Protein_107 | IS3 family transposase ISVpa2 | Transposase |
| VCASEI_RS19000 () | 109334..109882 | - | 549 | WP_110957874.1 | hypothetical protein | - |
| VCASEI_RS19005 () | 110085..111224 | - | 1140 | WP_110957875.1 | FMN-dependent L-lactate dehydrogenase LldD | - |
| VCASEI_RS19010 () | 111283..112974 | - | 1692 | WP_110957876.1 | L-lactate permease | - |
| VCASEI_RS19015 () | 113089..114632 | - | 1544 | Protein_111 | IS3 family transposase ISGur6 | Transposase |
| VCASEI_RS19020 () | 114823..115725 | + | 903 | WP_105902543.1 | LysR family transcriptional regulator | - |
| VCASEI_RS19025 () | 116003..117535 | - | 1533 | WP_110957877.1 | IS66 family transposase ISVa11 | Transposase |
| VCASEI_RS19030 () | 117595..117948 | - | 354 | WP_110957878.1 | IS66 family transposase ISVa11 | Transposase |
| VCASEI_RS19035 () | 117945..118265 | - | 321 | WP_004394070.1 | IS66 family transposase ISVa11 | Transposase |
| VCASEI_RS19040 () | 118445..118861 | - | 417 | WP_110957879.1 | hypothetical protein | - |
| VCASEI_RS19045 () | 118909..119523 | - | 615 | WP_110957880.1 | hypothetical protein | - |
| VCASEI_RS19050 () | 119801..121444 | - | 1644 | Protein_118 | hypothetical protein | - |
| VCASEI_RS19060 () | 122769..123242 | + | 474 | WP_110957881.1 | hypothetical protein | - |
| VCASEI_RS19065 () | 123305..123520 | - | 216 | WP_110957882.1 | hypothetical protein | - |
| VCASEI_RS19070 () | 123569..123793 | - | 225 | WP_110957883.1 | hypothetical protein | - |
| VCASEI_RS19075 () | 123817..124149 | - | 333 | WP_110957884.1 | hypothetical protein | - |
| VCASEI_RS19080 () | 124588..126186 | - | 1599 | WP_110957756.1 | IS66 family transposase | - |
| VCASEI_RS19085 () | 126302..126628 | - | 327 | WP_004393962.1 | IS66 family transposase ISMno13 | Transposase |
| VCASEI_RS19090 () | 126625..126999 | - | 375 | WP_110957753.1 | hypothetical protein | - |
| VCASEI_RS19095 () | 127181..127780 | - | 600 | WP_089110656.1 | hypothetical protein | - |
| VCASEI_RS19105 () | 128083..128658 | + | 576 | WP_089110658.1 | DUF2913 family protein | - |
| VCASEI_RS19110 () | 128655..129398 | - | 744 | WP_089110659.1 | M48 family metallopeptidase | - |
| VCASEI_RS19115 () | 129421..132618 | - | 3198 | WP_089110660.1 | type I restriction endonuclease subunit R | - |
| VCASEI_RS19120 () | 132646..133584 | - | 939 | WP_089110661.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| VCASEI_RS19125 () | 133577..134368 | - | 792 | WP_089110662.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| VCASEI_RS19130 () | 134492..135547 | - | 1056 | WP_089110663.1 | Fic family protein | - |
| VCASEI_RS19135 () | 135549..136808 | - | 1260 | WP_089110664.1 | restriction endonuclease subunit S | - |
| VCASEI_RS19140 () | 136801..138567 | - | 1767 | WP_089110665.1 | type I restriction-modification system subunit M | - |
| VCASEI_RS19145 () | 139102..140172 | - | 1071 | WP_174208769.1 | replication initiation protein | - |
| VCASEI_RS19530 () | 140934..141071 | - | 138 | WP_162621117.1 | hypothetical protein | - |
| VCASEI_RS19150 () | 141137..142330 | - | 1194 | WP_089110667.1 | Y-family DNA polymerase | - |
| VCASEI_RS19155 () | 142483..143805 | + | 1323 | WP_089110668.1 | site-specific integrase | - |
| VCASEI_RS19160 () | 143798..145543 | + | 1746 | WP_089110669.1 | hypothetical protein | - |
| VCASEI_RS19165 () | 145543..147597 | + | 2055 | WP_089110670.1 | hypothetical protein | - |
| VCASEI_RS19170 () | 147594..148052 | + | 459 | WP_089110671.1 | hypothetical protein | - |
| VCASEI_RS19175 () | 148204..148671 | - | 468 | WP_162621118.1 | DUF1097 domain-containing protein | - |
| VCASEI_RS19180 () | 148796..149629 | - | 834 | WP_089110673.1 | phosphoenolpyruvate hydrolase family protein | - |
| VCASEI_RS19185 () | 149647..150870 | - | 1224 | WP_089110674.1 | Tm-1-like ATP-binding domain-containing protein | - |
| VCASEI_RS19190 () | 151018..151689 | + | 672 | WP_089110675.1 | TetR/AcrR family transcriptional regulator; helix-turn-helix transcriptional regulator | - |
| VCASEI_RS19195 () | 152167..152565 | - | 399 | WP_089110676.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| VCASEI_RS19200 () | 153187..154254 | - | 1068 | WP_089110677.1 | replication initiation protein | - |
| VCASEI_RS19205 () | 155038..155373 | + | 336 | WP_027695148.1 | helix-turn-helix domain-containing protein | - |
| VCASEI_RS19210 () | 155366..156772 | + | 1407 | Protein_150 | HipA domain-containing protein | - |
| VCASEI_RS19215 () | 157444..157926 | + | 483 | WP_027695149.1 | mobile mystery protein A | - |
| VCASEI_RS19220 () | 158010..159089 | - | 1080 | WP_089110678.1 | winged helix-turn-helix transcriptional regulator | - |
| VCASEI_RS19225 () | 159089..160294 | - | 1206 | WP_089110679.1 | ParA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|