NC_017856376210..618754

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 242545 bp
Accession: NC_017856        Location: 376210..618754         Organism: Methylophaga frappieri       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Q7C_RS01805 () 371608..373401 + 1794 WP_014702999.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
Q7C_RS01810 () 373404..375107 + 1704 WP_014703000.1 NADPH-dependent assimilatory sulfite reductase hemoprotein subunit -
Q7C_RS01815 () 375132..376364 + 1233 WP_014703001.1 NAD(P)/FAD-dependent oxidoreductase -
Q7C_RS01820 () 376463..377164 + 702 WP_014703002.1 Enterobactin synthase component D VF
Q7C_RS01825 () 377212..378534 - 1323 WP_041366383.1 hypothetical protein -
Q7C_RS01830 () 378549..379328 - 780 WP_202946511.1 outer membrane lipoprotein-sorting protein -
Q7C_RS13650 () 379373..379651 - 279 Protein_359 MMPL family transporter -
Q7C_RS01835 () 379543..381663 - 2121 WP_014703006.1 MMPL family transporter -
Q7C_RS01840 () 381688..383445 - 1758 WP_014703007.1 Putative multidrug export ATP-binding/permease protein VF
Q7C_RS01845 () 383438..385225 - 1788 WP_014703008.1 Iron import ATP-binding/permease protein IrtB VF
Q7C_RS01850 () 385621..388626 + 3006 WP_014703009.1 2,3-dihydroxybenzoate-AMP ligase VF
Q7C_RS01855 () 388626..398468 + 9843 WP_014703010.1 Tyrocidine synthase 3 VF
Q7C_RS01860 () 398465..403024 + 4560 WP_014703011.1 Phenyloxazoline synthase MbtB VF
Q7C_RS01865 () 403081..403896 + 816 WP_014703012.1 Thioesterase PikA5 VF
Q7C_RS01870 () 403998..404957 + 960 WP_014703013.1 ABC transporter substrate-binding protein -
Q7C_RS01875 () 404982..405989 + 1008 WP_014703014.1 putative siderophore transport system permease protein YfiZ VF
Q7C_RS01880 () 406127..407077 + 951 WP_014703015.1 Iron-uptake system permease protein FeuC VF
Q7C_RS01885 () 407077..407880 + 804 WP_014703016.1 putative siderophore transport system ATP-binding protein YusV VF
Q7C_RS01890 () 407907..408782 + 876 WP_014703017.1 ABC transporter ATP-binding protein -
Q7C_RS01895 () 408798..412442 + 3645 WP_014703018.1 ABC-2 transporter permease -
Q7C_RS01900 () 412489..412719 + 231 WP_014703019.1 Isochorismatase VF
Q7C_RS01905 () 412774..414168 + 1395 WP_014703020.1 hypothetical protein -
Q7C_RS01910 () 414302..416428 + 2127 WP_014703021.1 TonB-dependent receptor -
Q7C_RS01915 () 416594..417667 + 1074 WP_014703022.1 saccharopine dehydrogenase NADP-binding domain-containing protein -
Q7C_RS01920 () 417678..419588 + 1911 WP_014703023.1 saccharopine dehydrogenase NADP-binding domain-containing protein -
Q7C_RS01925 () 419643..420569 - 927 WP_014703024.1 Regulatory protein PchR VF
Q7C_RS01930 () 420820..422478 + 1659 WP_014703025.1 Energy-dependent translational throttle protein EttA VF
Q7C_RS01935 () 422530..422793 + 264 WP_014703026.1 hypothetical protein -
Q7C_RS01940 () 423002..424762 + 1761 WP_014703027.1 HAD-IIB family hydrolase -
Q7C_RS01945 () 424755..425978 + 1224 WP_014703028.1 glycosyl transferase -
Q7C_RS01950 () 425975..427726 + 1752 WP_014703029.1 sugar phosphorylase -
Q7C_RS01955 () 427797..428648 + 852 WP_014703030.1 UTP--glucose-1-phosphate uridylyltransferase VF
Q7C_RS01960 () 428676..429200 + 525 WP_151194708.1 diguanylate cyclase -
Q7C_RS01965 () 429651..431378 + 1728 WP_014703033.1 cyanophycin synthetase -
Q7C_RS01970 () 431381..432880 + 1500 WP_041366390.1 acyl--CoA ligase -
Q7C_RS01975 () 432950..434287 - 1338 WP_014703035.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
Q7C_RS01980 () 434353..434946 - 594 WP_014703036.1 YdbL family protein -
Q7C_RS01985 () 434957..437017 - 2061 WP_014703037.1 hypothetical protein -
Q7C_RS01990 () 437017..437901 - 885 WP_014703038.1 cysteine synthase CysM -
Q7C_RS01995 () 437901..438287 - 387 WP_014703039.1 holo-ACP synthase -
Q7C_RS02000 () 438284..439012 - 729 WP_014703040.1 Pyridoxine 5'-phosphate synthase VF
Q7C_RS02005 () 439009..439743 - 735 WP_014703041.1 DNA repair protein RecO -
Q7C_RS02010 () 439752..440657 - 906 WP_014703042.1 GTPase Era -
Q7C_RS02015 () 440654..441337 - 684 WP_014703043.1 ribonuclease III -
Q7C_RS02020 () 441334..441723 - 390 WP_014703044.1 DUF4845 domain-containing protein -
Q7C_RS02025 () 441734..442495 - 762 WP_014703045.1 signal peptidase I -
Q7C_RS02030 () 442511..444307 - 1797 WP_014703046.1 translation elongation factor 4 -
Q7C_RS02035 () 444533..446512 - 1980 WP_151194709.1 TonB-dependent receptor -
Q7C_RS02040 () 446623..447984 - 1362 WP_014703048.1 sensor histidine kinase -
Q7C_RS02045 () 447981..448664 - 684 WP_014703049.1 Transcriptional regulatory protein OmpR VF
Q7C_RS02050 () 448788..450221 - 1434 WP_014703050.1 Periplasmic serine endoprotease DegP VF
Q7C_RS02055 () 450218..450643 - 426 WP_014703051.1 Protein RseC VF
Q7C_RS02060 () 450640..451620 - 981 WP_014703052.1 Sigma factor AlgU regulatory protein MucB VF
Q7C_RS02065 () 451623..452198 - 576 WP_014703053.1 anti-sigma factor -
Q7C_RS02070 () 452202..452777 - 576 WP_014703054.1 ECF RNA polymerase sigma-E factor VF
Q7C_RS02075 () 452906..454510 + 1605 WP_050954416.1 L-aspartate oxidase -
Q7C_RS02080 () 454485..454904 - 420 WP_041366395.1 hypothetical protein -
Q7C_RS02085 () 454967..455863 + 897 WP_014703057.1 folate-binding protein YgfZ -
Q7C_RS02090 () 455860..457245 - 1386 WP_014703058.1 Regulatory protein AtoC VF
Q7C_RS02095 () 457242..458819 - 1578 WP_014703059.1 Sensor protein ZraS VF
Q7C_RS02100 () 458812..459045 - 234 WP_014703060.1 hypothetical protein -
Q7C_RS02105 () 459108..460937 - 1830 WP_014703061.1 translational GTPase TypA -
Q7C_RS02110 () 461000..461794 - 795 WP_014703062.1 inositol-1-monophosphatase -
Q7C_RS02115 () 462025..462324 + 300 WP_014703063.1 hypothetical protein -
Q7C_RS02120 () 462389..463552 - 1164 WP_014703064.1 L,D-transpeptidase family protein -
Q7C_RS02125 () 463694..464476 + 783 WP_014703065.1 outer membrane protein assembly factor BamD -
Q7C_RS02130 () 464526..464864 - 339 WP_014703066.1 P-II family nitrogen regulator -
Q7C_RS02135 () 464874..466514 - 1641 WP_014703067.1 NAD+ synthase -
Q7C_RS02140 () 466511..467392 - 882 WP_014703068.1 succinate--CoA ligase subunit alpha -
Q7C_RS02145 () 467389..468561 - 1173 WP_014703069.1 ADP-forming succinate--CoA ligase subunit beta -
Q7C_RS13240 () 468693..469665 + 973 Protein_423 prolyl aminopeptidase -
Q7C_RS02160 () 469662..470099 + 438 WP_014703072.1 D-tyrosyl-tRNA(Tyr) deacylase -
Q7C_RS02165 () 470247..470726 + 480 WP_151194786.1 lytic murein transglycosylase -
Q7C_RS02170 () 470714..473590 - 2877 WP_151194787.1 putative signaling protein VF
Q7C_RS02175 () 473681..473881 - 201 WP_041366401.1 cbb3-type cytochrome oxidase assembly protein CcoS -
Q7C_RS02180 () 473894..476260 - 2367 Protein_428 heavy metal translocating P-type ATPase -
Q7C_RS02185 () 476361..476864 - 504 WP_014703077.1 FixH family protein -
Q7C_RS02190 () 476864..478180 - 1317 WP_151194788.1 cytochrome c oxidase accessory protein CcoG -
Q7C_RS02195 () 478585..479511 - 927 WP_014703081.1 cytochrome-c oxidase, cbb3-type subunit III -
Q7C_RS02200 () 479504..479674 - 171 WP_202946524.1 cbb3-type cytochrome c oxidase subunit 3 -
Q7C_RS02205 () 479709..480386 - 678 WP_014703083.1 cytochrome-c oxidase, cbb3-type subunit II -
Q7C_RS02210 () 480397..481821 - 1425 WP_014703084.1 cytochrome-c oxidase, cbb3-type subunit I -
Q7C_RS02215 () 482140..482544 - 405 WP_014703085.1 Mth938-like domain-containing protein -
Q7C_RS02220 () 482548..482841 - 294 WP_014703086.1 integration host factor subunit beta -
Q7C_RS02225 () 482960..484633 - 1674 WP_014703087.1 30S ribosomal protein S1 -
Q7C_RS02230 () 484752..485417 - 666 WP_014703088.1 (d)CMP kinase -
Q7C_RS02235 () 485410..486729 - 1320 WP_014703089.1 3-phosphoshikimate 1-carboxyvinyltransferase -
Q7C_RS02240 () 486747..487634 - 888 WP_014703090.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
Q7C_RS02245 () 487627..488721 - 1095 WP_014703091.1 histidinol-phosphate transaminase -
Q7C_RS02250 () 488718..489185 - 468 WP_014703092.1 Lipoprotein signal peptidase VF
Q7C_RS02255 () 489192..491978 - 2787 WP_041366405.1 isoleucine--tRNA ligase -
Q7C_RS02260 () 492151..492444 + 294 WP_014703094.1 DUF3579 domain-containing protein -
Q7C_RS02265 () 492448..492900 - 453 WP_014703095.1 CBS domain-containing protein -
Q7C_RS02270 () 493009..495309 - 2301 WP_014703096.1 FdhF/YdeP family oxidoreductase -
Q7C_RS02275 () 495596..497176 - 1581 WP_014703097.1 Peptide chain release factor 3 VF
Q7C_RS02280 () 497433..498080 - 648 WP_000854920.1 LexA family transcriptional regulator -
Q7C_RS02285 () 498198..498449 + 252 WP_000451746.1 helix-turn-helix domain-containing protein -
Q7C_RS02290 () 498505..499373 + 869 Protein_450 hypothetical protein -
Q7C_RS02295 () 499414..500022 + 609 WP_025587951.1 hypothetical protein -
Q7C_RS02300 () 500009..500557 + 549 WP_008843242.1 lytic transglycosylase domain-containing protein -
Q7C_RS02305 () 500554..500853 + 300 WP_008843241.1 flagellar transcriptional regulator FlhD -
Q7C_RS02310 () 500850..501383 + 534 WP_000566753.1 hypothetical protein -
Q7C_RS13450 () 501441..501872 + 432 WP_008843240.1 hypothetical protein -
Q7C_RS02320 () 501905..505474 - 3570 WP_008843239.1 conjugal transfer protein TraG N-terminal domain-containing protein -
Q7C_RS02325 () 505478..506866 - 1389 WP_008843238.1 conjugal transfer protein TraH -
Q7C_RS02330 () 506869..507813 - 945 WP_008843237.1 thioredoxin family protein -
Q7C_RS02335 () 507937..509847 - 1911 WP_008843236.1 hypothetical protein -
Q7C_RS02340 () 509844..511847 - 2004 WP_151194710.1 ATP-binding domain-containing protein -
Q7C_RS02345 () 511942..512247 + 306 WP_008843234.1 IS66 family transposase ISAeme5 Transposase
Q7C_RS02350 () 512254..512604 + 351 WP_008843233.1 IS66 family transposase ISAnsp12 Transposase
Q7C_RS02355 () 512673..514253 + 1581 WP_008843232.1 IS66 family transposase ISPsy5 Transposase
Q7C_RS02360 () 514417..515913 + 1497 WP_008843231.1 IS91 family transposase ISVsa3 Transposase
Q7C_RS02370 () 516452..517879 - 1428 WP_008843230.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -
Q7C_RS02375 () 518209..520305 - 2097 WP_008843229.1 HlyD family efflux transporter periplasmic adaptor subunit -
Q7C_RS02380 () 520302..521726 - 1425 WP_008843228.1 biotin/lipoyl-binding protein -
Q7C_RS02385 () 521796..522608 - 813 WP_008843227.1 HlyD family efflux transporter periplasmic adaptor subunit -
Q7C_RS02390 () 522609..524513 - 1905 WP_014703103.1 TolC family protein -
Q7C_RS02395 () 524590..527298 - 2709 WP_202946512.1 tandem-95 repeat protein -
Q7C_RS02400 () 527243..528139 - 897 WP_041366420.1 hypothetical protein -
Q7C_RS02405 () 528114..531008 - 2895 WP_187287368.1 hypothetical protein -
Q7C_RS02410 () 530975..531457 - 483 WP_041366422.1 hypothetical protein -
Q7C_RS02415 () 531561..538841 - 7281 WP_041366424.1 DUF4347 domain-containing protein -
Q7C_RS02420 () 539138..539458 + 321 WP_151194711.1 DUF3461 family protein -
Q7C_RS02425 () 539508..541049 - 1542 WP_008844809.1 SpoVR family protein -
Q7C_RS02430 () 541317..542807 + 1491 WP_083839442.1 Heme/hemopexin-binding protein VF
Q7C_RS02435 () 542800..543654 - 855 WP_008844807.1 DUF4145 domain-containing protein -
Q7C_RS02440 () 543716..544123 - 408 WP_008844806.1 helix-turn-helix domain-containing protein -
Q7C_RS02445 () 544213..544947 - 735 WP_014703111.1 hypothetical protein -
Q7C_RS02450 () 545037..546104 - 1068 WP_014703112.1 toprim domain-containing protein -
Q7C_RS02455 () 546195..546536 - 342 WP_014703113.1 hypothetical protein -
Q7C_RS02460 () 546536..547033 - 498 WP_012368361.1 DNA repair protein RadC -
Q7C_RS02465 () 547120..548775 - 1656 WP_014703114.1 VWA domain-containing protein -
Q7C_RS02470 () 548845..549285 - 441 WP_014703115.1 hypothetical protein -
Q7C_RS02475 () 549347..550300 - 954 WP_014703116.1 DUF3150 domain-containing protein -
Q7C_RS02480 () 550399..551166 - 768 WP_014703117.1 hypothetical protein -
Q7C_RS02485 () 551166..552125 - 960 WP_014703118.1 CbbQ/NirQ/NorQ C-terminal domain-containing protein -
Q7C_RS02490 () 552335..553351 - 1017 WP_014703119.1 YqaJ viral recombinase family protein -
Q7C_RS13655 () 553412..553555 - 144 WP_014703120.1 hypothetical protein -
Q7C_RS02495 () 553639..554457 - 819 WP_014703121.1 phage recombination protein Bet -
Q7C_RS02500 () 554567..554956 - 390 WP_014703122.1 single-stranded DNA-binding protein -
Q7C_RS02505 () 554972..555298 - 327 WP_007104995.1 hypothetical protein -
Q7C_RS02510 () 555666..556268 + 603 WP_014703123.1 hypothetical protein -
Q7C_RS02515 () 556596..557417 + 822 WP_014703124.1 glycosyltransferase -
Q7C_RS02520 () 557410..560463 + 3054 WP_014703125.1 glycosyltransferase family 2 protein -
Q7C_RS13590 () 560393..561160 - 768 WP_151194712.1 hypothetical protein -
Q7C_RS02525 () 561185..562066 - 882 WP_014703126.1 radical SAM protein -
Q7C_RS02530 () 562388..566080 - 3693 WP_014703127.1 conjugal transfer protein TraN -
Q7C_RS02535 () 566083..567111 - 1029 WP_014703128.1 TraU family protein -
Q7C_RS02540 () 567095..568219 - 1125 WP_014703129.1 IncF plasmid conjugative transfer pilus assembly protein TraW -
Q7C_RS02545 () 568230..568742 - 513 WP_014703130.1 S26 family signal peptidase -
Q7C_RS02550 () 568726..569073 - 348 WP_014703131.1 hypothetical protein -
Q7C_RS02555 () 569066..571465 - 2400 WP_014703132.1 type IV secretion system protein TraC -
Q7C_RS02560 () 571465..572157 - 693 WP_014703133.1 DsbC family protein -
Q7C_RS02565 () 572289..573227 - 939 WP_014703134.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin Detail
Q7C_RS02570 () 573220..574011 - 792 WP_041366844.1 type IV toxin-antitoxin system AbiEi family antitoxin Antitoxin Detail
Q7C_RS02575 () 574231..574617 - 387 WP_000180225.1 hypothetical protein -
Q7C_RS02580 () 574614..575186 - 573 WP_001944091.1 type IV conjugative transfer system lipoprotein TraV -
Q7C_RS02585 () 575261..576550 - 1290 WP_014703136.1 TraB/VirB10 family protein -
Q7C_RS02590 () 576550..577449 - 900 WP_014703137.1 type-F conjugative transfer system secretin TraK -
Q7C_RS02595 () 577433..578059 - 627 WP_000667170.1 hypothetical protein -
Q7C_RS02600 () 578056..578337 - 282 WP_000433891.1 type IV conjugative transfer system protein TraL -
Q7C_RS02605 () 578518..578841 + 324 WP_001896384.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
Q7C_RS02610 () 578838..579116 + 279 WP_000058216.1 helix-turn-helix domain-containing protein Antitoxin Detail
Q7C_RS02615 () 579142..579777 - 636 WP_014703138.1 DUF4400 domain-containing protein -
Q7C_RS02620 () 579764..580324 - 561 WP_014703139.1 hypothetical protein -
Q7C_RS02625 () 580334..582154 - 1821 WP_000661885.1 conjugative transfer system coupling protein TraD -
Q7C_RS02630 () 582203..584353 - 2151 WP_014703140.1 TraI domain-containing protein -
Q7C_RS02635 () 584434..585831 - 1398 WP_014703141.1 hypothetical protein -
Q7C_RS02640 () 585831..590882 - 5052 WP_014703142.1 AAA family ATPase -
Q7C_RS02645 () 591128..594358 - 3231 WP_014703143.1 DEAD/DEAH box helicase family protein -
Q7C_RS02650 () 594355..595650 - 1296 WP_014703144.1 restriction endonuclease subunit S -
Q7C_RS13755 () 595647..595907 - 261 WP_014703145.1 hypothetical protein -
Q7C_RS02660 () 596096..597724 - 1629 WP_014703146.1 N-6 DNA methylase -
Q7C_RS02665 () 597733..598665 - 933 WP_014703147.1 WYL domain-containing protein -
Q7C_RS02670 () 598987..599286 - 300 WP_014703148.1 hypothetical protein -
Q7C_RS02675 () 599374..600279 - 906 WP_014703149.1 DNA polymerase III subunit epsilon -
Q7C_RS02680 () 600920..601369 + 450 WP_014703150.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
Q7C_RS02685 () 601377..602645 + 1269 WP_041366434.1 translesion error-prone DNA polymerase V subunit UmuC -
Q7C_RS02690 () 602656..603099 - 444 WP_014703152.1 hypothetical protein -
Q7C_RS02695 () 603564..604538 + 975 WP_014703154.1 ParM/StbA family protein -
Q7C_RS02700 () 604541..604810 + 270 WP_039847056.1 hypothetical protein -
Q7C_RS02705 () 604812..606053 + 1242 WP_008305558.1 Prophage integrase IntS ; Integrase Integrase
Q7C_RS02710 () 606070..606264 - 195 WP_000127614.1 DNA-binding protein -
Q7C_RS02715 () 607020..609074 - 2055 WP_014703157.1 sensor domain-containing diguanylate cyclase -
Q7C_RS02720 () 609224..610084 - 861 WP_014703158.1 universal stress protein -
Q7C_RS02725 () 610093..611583 - 1491 WP_014703159.1 SulP family inorganic anion transporter -
Q7C_RS02730 () 611831..613093 + 1263 WP_014703160.1 mechanosensitive ion channel family protein -
Q7C_RS02735 () 613232..613744 + 513 WP_014703161.1 MarR family transcriptional regulator -
Q7C_RS02740 () 613734..614927 + 1194 WP_151194713.1 multidrug effflux MFS transporter -
Q7C_RS02745 () 614992..616359 + 1368 WP_014703163.1 TolC family protein -
Q7C_RS02750 () 616359..617528 + 1170 WP_014703164.1 efflux RND transporter periplasmic adaptor subunit -
Q7C_RS02755 () 617521..620649 + 3129 WP_014703165.1 efflux RND transporter permease subunit -
Q7C_RS02760 () 620653..621420 - 768 WP_014703166.1 ATP-binding protein -
Q7C_RS02765 () 621508..623607 - 2100 WP_014703167.1 polyribonucleotide nucleotidyltransferase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance