MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93842 bp
Accession: NC_017720 Location: 1..93842 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon: plasmid pSLT_SL1344
Accession: NC_017720 Location: 1..93842 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon: plasmid pSLT_SL1344
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL1344_RS23640 () | 21..584 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| SL1344_RS23645 () | 639..1379 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| SL1344_RS23650 () | 1399..6657 | - | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| SL1344_RS23655 () | 6739..6966 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SL1344_RS23660 () | 6966..7364 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SL1344_RS23665 () | 7373..9535 | - | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| SL1344_RS23670 () | 9912..10643 | - | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| SL1344_RS23675 () | 10679..11173 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| SL1344_RS23680 () | 11189..14011 | - | 2823 | WP_001007087.1 | conjugal transfer mating pair stabilization protein TraG | - |
| SL1344_RS23685 () | 14008..15390 | - | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| SL1344_RS23690 () | 15380..15928 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SL1344_RS23695 () | 15915..16208 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| SL1344_RS23700 () | 16422..17171 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SL1344_RS23705 () | 17183..17398 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| SL1344_RS23710 () | 17409..19235 | - | 1827 | WP_000827529.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SL1344_RS23715 () | 19232..19651 | - | 420 | WP_001229397.1 | HNH endonuclease | - |
| SL1344_RS23720 () | 19688..20326 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SL1344_RS23725 () | 20311..20619 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| SL1344_RS23730 () | 20638..21630 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| SL1344_RS23735 () | 21627..22259 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| SL1344_RS23740 () | 22256..22642 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| SL1344_RS23745 () | 22617..25265 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| SL1344_RS23750 () | 25281..25544 | - | 264 | WP_001239255.1 | hypothetical protein | - |
| SL1344_RS23755 () | 25661..26128 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| SL1344_RS23760 () | 26121..26342 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| SL1344_RS23765 () | 26477..26992 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SL1344_RS23770 () | 26989..27234 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| SL1344_RS23775 () | 27212..27808 | - | 597 | WP_000527897.1 | conjugal transfer protein TraP | - |
| SL1344_RS23780 () | 27798..29219 | - | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| SL1344_RS23785 () | 29219..29959 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| SL1344_RS23790 () | 29946..30512 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| SL1344_RS23795 () | 30534..30845 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| SL1344_RS23800 () | 30860..31222 | - | 363 | WP_001273051.1 | type IV conjugative transfer system pilin TraA | - |
| SL1344_RS26285 () | 31264..31491 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| SL1344_RS23805 () | 31585..32271 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| SL1344_RS23810 () | 32464..32844 | - | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| SL1344_RS23815 () | 33259..33729 | + | 471 | WP_014344446.1 | transglycosylase SLT domain-containing protein | - |
| SL1344_RS27530 () | 34040..34858 | - | 819 | Protein_37 | DUF945 domain-containing protein | - |
| SL1344_RS27480 () | 34961..35119 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| SL1344_RS23830 () | 35368..36105 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| SL1344_RS23835 () | 36102..36536 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| SL1344_RS23840 () | 36576..38573 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| SL1344_RS23845 () | 38642..38884 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| SL1344_RS23850 () | 38939..39457 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| SL1344_RS23860 () | 40158..40481 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| SL1344_RS23865 () | 40717..41151 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| SL1344_RS23870 () | 41218..41652 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| SL1344_RS23875 () | 42148..42912 | - | 765 | WP_001246548.1 | membrane protein | - |
| SL1344_RS23880 () | 42984..43397 | - | 414 | WP_000990115.1 | DUF1380 family protein | - |
| SL1344_RS23885 () | 43453..43674 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| SL1344_RS23890 () | 43674..44354 | - | 681 | WP_000088645.1 | DNA methylase | - |
| SL1344_RS23900 () | 44736..45092 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| SL1344_RS26885 () | 45085..45555 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| SL1344_RS23910 () | 46066..46488 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SL1344_RS23915 () | 46488..47762 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| SL1344_RS23920 () | 47844..48818 | - | 975 | WP_000064272.1 | ParB/RepB/Spo0J family partition protein | - |
| SL1344_RS23925 () | 48818..50023 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SL1344_RS23930 () | 50438..51379 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SL1344_RS23935 () | 51411..51977 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SL1344_RS23940 () | 52034..52369 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| SL1344_RS23945 () | 52553..52969 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| SL1344_RS23950 () | 53055..54170 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SL1344_RS23955 () | 54429..54917 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| SL1344_RS23960 () | 55572..56312 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SL1344_RS23965 () | 56519..57079 | + | 561 | WP_001240331.1 | recombinase family protein | - |
| SL1344_RS23970 () | 57063..58727 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SL1344_RS23975 () | 58660..59685 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| SL1344_RS23980 () | 59874..60911 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| SL1344_RS23985 () | 61520..62413 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| SL1344_RS23990 () | 62587..62751 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SL1344_RS23995 () | 62925..63692 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| SL1344_RS27535 () | 63655..63822 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| SL1344_RS24000 () | 63874..65649 | + | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SL1344_RS24005 () | 65930..66655 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SL1344_RS24010 () | 66916..67566 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SL1344_RS26320 () | 67693..68117 | - | 425 | Protein_75 | IS200/IS605 family transposase | - |
| SL1344_RS24020 () | 68174..68524 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SL1344_RS24025 () | 68591..69151 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| SL1344_RS24035 () | 69880..70365 | - | 486 | WP_000905606.1 | membrane protein | - |
| SL1344_RS24040 () | 70359..70868 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SL1344_RS24045 () | 70872..71585 | - | 714 | Protein_80 | EAL domain-containing protein | - |
| SL1344_RS24050 () | 71594..72376 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| SL1344_RS24055 () | 72411..72932 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| SL1344_RS24060 () | 72929..73219 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| SL1344_RS24065 () | 73221..73526 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SL1344_RS24070 () | 73528..73746 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SL1344_RS24075 () | 74422..74943 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| SL1344_RS26895 () | 75427..75723 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| SL1344_RS24085 () | 76217..77206 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| SL1344_RS27315 () | 77465..77909 | - | 445 | Protein_89 | site-specific integrase | - |
| SL1344_RS24095 () | 78078..78459 | - | 382 | Protein_90 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SL1344_RS24100 () | 79178..79480 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SL1344_RS24105 () | 79755..80273 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| SL1344_RS24110 () | 80501..82909 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| SL1344_RS24115 () | 82902..83594 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| SL1344_RS24120 () | 83609..84166 | + | 558 | WP_010999940.1 | membrane protein | - |
| SL1344_RS24125 () | 84419..85294 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| SL1344_RS24130 () | 85726..85938 | + | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| SL1344_RS24135 () | 85923..86273 | + | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| SL1344_RS24140 () | 86518..87171 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| SL1344_RS27540 () | 87161..87307 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| SL1344_RS24145 () | 87304..88203 | + | 900 | WP_000990048.1 | YjiK family protein | - |
| SL1344_RS24150 () | 88293..88850 | + | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| SL1344_RS24155 () | 89117..89875 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| SL1344_RS24160 () | 89972..90193 | - | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| SL1344_RS24165 () | 91053..91934 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| SL1344_RS24170 () | 91915..91992 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SL1344_RS24180 () | 92242..92508 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| SL1344_RS24185 () | 92687..93130 | - | 444 | WP_010999935.1 | phospholipase | - |
| SL1344_RS24190 () | 93296..93451 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| SL1344_RS24195 () | 93464..93748 | - | 285 | WP_000477658.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|