MGE detailed information
MGE type: Mobilizable plasmid MGE length: 66078 bp
Accession: NC_017657 Location: 1..66078 Organism: Escherichia coli O55:H7 str. RM12579 Replicon: plasmid p12579_2
Accession: NC_017657 Location: 1..66078 Organism: Escherichia coli O55:H7 str. RM12579 Replicon: plasmid p12579_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO55CA74_RS26945 () | 174..452 | + | 279 | WP_072131700.1 | antirestriction protein | - |
| ECO55CA74_RS26950 () | 499..921 | + | 423 | WP_000271758.1 | DUF1380 family protein | - |
| ECO55CA74_RS26955 () | 918..1109 | + | 192 | WP_001024835.1 | hypothetical protein | - |
| ECO55CA74_RS32065 () | 1608..1814 | + | 207 | WP_000275846.1 | hypothetical protein | - |
| ECO55CA74_RS26975 () | 1839..2126 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| ECO55CA74_RS26980 () | 2245..3066 | + | 822 | WP_001234472.1 | DUF945 domain-containing protein | - |
| ECO55CA74_RS26985 () | 3345..4685 | + | 1341 | WP_001130323.1 | IS4 family transposase ISCro3 | Transposase |
| ECO55CA74_RS26990 () | 4806..5396 | - | 591 | WP_013009334.1 | hypothetical protein | VF |
| ECO55CA74_RS26995 () | 5729..6112 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| ECO55CA74_RS31355 () | 6299..6988 | + | 690 | Protein_9 | conjugal transfer transcriptional regulator TraJ | - |
| ECO55CA74_RS27005 () | 7087..7482 | + | 396 | WP_013009335.1 | conjugal transfer relaxosome protein TraY | - |
| ECO55CA74_RS27010 () | 7515..7879 | + | 365 | Protein_11 | type IV conjugative transfer system pilin TraA | - |
| ECO55CA74_RS27015 () | 7894..8205 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| ECO55CA74_RS27020 () | 8227..8793 | + | 567 | WP_000399770.1 | type IV conjugative transfer system protein TraE | - |
| ECO55CA74_RS27025 () | 8780..9280 | + | 501 | Protein_14 | type-F conjugative transfer system secretin TraK | - |
| ECO55CA74_RS27030 () | 9311..10057 | + | 747 | Protein_15 | conjugative transfer relaxase/helicase TraI | - |
| ECO55CA74_RS27035 () | 10045..10518 | + | 474 | Protein_16 | DNA helicase | - |
| ECO55CA74_RS27040 () | 10538..11284 | + | 747 | WP_000205758.1 | conjugal transfer pilus acetylase TraX | - |
| ECO55CA74_RS27045 () | 11339..11899 | + | 561 | WP_000139371.1 | fertility inhibition protein FinO | - |
| ECO55CA74_RS27050 () | 12034..12239 | + | 206 | Protein_19 | hypothetical protein | - |
| ECO55CA74_RS27055 () | 12485..12879 | + | 395 | Protein_20 | thermonuclease family protein | - |
| ECO55CA74_RS31360 () | 13242..13385 | - | 144 | Protein_21 | IS3 family transposase | - |
| ECO55CA74_RS27060 () | 13388..13531 | - | 144 | Protein_22 | IS3 family transposase IS911 | Transposase |
| ECO55CA74_RS29820 () | 13609..14282 | + | 674 | Protein_23 | DDE-type integrase/transposase/recombinase | - |
| ECO55CA74_RS27075 () | 14784..17444 | + | 2661 | WP_000770129.1 | Metalloprotease StcE | VF |
| ECO55CA74_RS27080 () | 17528..18403 | + | 876 | WP_001368871.1 | Type II secretion system protein C | VF |
| ECO55CA74_RS27085 () | 18404..20374 | + | 1971 | WP_013009342.1 | Type II secretion system protein D | VF |
| ECO55CA74_RS27090 () | 20371..21873 | + | 1503 | WP_001418198.1 | Type II secretion system protein E | VF |
| ECO55CA74_RS27095 () | 21875..23098 | + | 1224 | WP_001173149.1 | Type II secretion system protein F | VF |
| ECO55CA74_RS27100 () | 23129..23563 | + | 435 | WP_001231213.1 | Type II secretion system protein G | VF |
| ECO55CA74_RS27105 () | 23560..24111 | + | 552 | WP_000082928.1 | type II secretion system minor pseudopilin GspH | - |
| ECO55CA74_RS27110 () | 24126..24473 | + | 348 | WP_001420206.1 | Type II secretion system protein I | VF |
| ECO55CA74_RS27115 () | 24470..25069 | + | 600 | WP_000082784.1 | Type II secretion system protein J | VF |
| ECO55CA74_RS27120 () | 25066..26043 | + | 978 | WP_000842183.1 | Putative type II secretion system protein K | VF |
| ECO55CA74_RS27125 () | 26082..27254 | + | 1173 | WP_071526091.1 | Type II secretion system protein L | VF |
| ECO55CA74_RS27130 () | 27241..27756 | + | 516 | WP_000998852.1 | Type II secretion system protein M | VF |
| ECO55CA74_RS27135 () | 27808..28641 | + | 834 | WP_000088803.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| ECO55CA74_RS27140 () | 28735..29136 | + | 402 | WP_001222321.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| ECO55CA74_RS30750 () | 29211..29426 | + | 216 | Protein_38 | IS3 family transposase IS1203 | Transposase |
| ECO55CA74_RS31930 () | 29725..30018 | + | 294 | Protein_39 | hypothetical protein | - |
| ECO55CA74_RS27155 () | 30247..30495 | + | 249 | WP_000083841.1 | replication regulatory protein RepA | - |
| ECO55CA74_RS32070 () | 30518..30625 | + | 108 | Protein_41 | incFII family plasmid replication initiator RepA | - |
| ECO55CA74_RS31935 () | 31326..31484 | + | 159 | WP_000829588.1 | hypothetical protein | - |
| ECO55CA74_RS27165 () | 31539..31808 | + | 270 | WP_000079946.1 | hypothetical protein | Antitoxin Detail |
| ECO55CA74_RS27170 () | 31805..32086 | + | 282 | WP_000969997.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECO55CA74_RS27175 () | 32282..32623 | - | 342 | WP_000578011.1 | hypothetical protein | - |
| ECO55CA74_RS27180 () | 32923..33510 | + | 588 | WP_001418189.1 | serine acetyltransferase | - |
| ECO55CA74_RS27185 () | 33792..34385 | - | 594 | WP_000517696.1 | hypothetical protein | - |
| ECO55CA74_RS27190 () | 34739..36085 | + | 1347 | WP_001132032.1 | hypothetical protein | - |
| ECO55CA74_RS27195 () | 36364..38244 | + | 1881 | WP_001283342.1 | colicin 1A | - |
| ECO55CA74_RS27200 () | 38266..38601 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| ECO55CA74_RS27205 () | 38730..39077 | + | 348 | WP_000142440.1 | hypothetical protein | - |
| ECO55CA74_RS27210 () | 39095..39685 | - | 591 | WP_000194567.1 | hypothetical protein | - |
| ECO55CA74_RS27215 () | 39805..40446 | - | 642 | WP_000470626.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ECO55CA74_RS27220 () | 40601..43579 | + | 2979 | WP_000124031.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| ECO55CA74_RS27225 () | 43657..44061 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| ECO55CA74_RS27230 () | 44058..44405 | + | 348 | WP_000612550.1 | IS66 family transposase ISKpn24 | Transposase |
| ECO55CA74_RS27235 () | 44454..45992 | + | 1539 | WP_000099187.1 | IS66 family transposase ISEc22 | Transposase |
| ECO55CA74_RS29860 () | 46074..46514 | + | 441 | WP_072141484.1 | recombinase family protein | - |
| ECO55CA74_RS27240 () | 46495..47202 | + | 708 | Protein_59 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| ECO55CA74_RS27245 () | 47288..48031 | + | 744 | Protein_60 | IS21 family transposase IS100kyp | Transposase |
| ECO55CA74_RS27250 () | 48168..48832 | + | 665 | Protein_61 | tyrosine-type recombinase/integrase | - |
| ECO55CA74_RS27255 () | 49555..50880 | + | 1326 | WP_001025657.1 | hypothetical protein | VF |
| ECO55CA74_RS29865 () | 51029..51312 | + | 284 | Protein_63 | YkgJ family cysteine cluster protein | - |
| ECO55CA74_RS27280 () | 53183..53620 | - | 438 | WP_000273581.1 | hypothetical protein | - |
| ECO55CA74_RS27285 () | 53869..54048 | - | 180 | WP_000526857.1 | hypothetical protein | - |
| ECO55CA74_RS27290 () | 54251..54625 | + | 375 | WP_001368887.1 | hypothetical protein | - |
| ECO55CA74_RS31375 () | 54936..55097 | - | 162 | Protein_68 | epoxyqueuosine reductase QueH | - |
| ECO55CA74_RS27730 () | 55148..55288 | + | 141 | Protein_69 | serine/threonine protein kinase | - |
| ECO55CA74_RS27300 () | 55412..56152 | + | 741 | WP_001066926.1 | IS91 family transposase ISMno23 | Transposase |
| ECO55CA74_RS27305 () | 56436..57413 | - | 978 | WP_000361616.1 | RepB family plasmid replication initiator protein | - |
| ECO55CA74_RS29885 () | 58059..58464 | - | 406 | Protein_72 | DDE-type integrase/transposase/recombinase | - |
| ECO55CA74_RS27315 () | 58466..58753 | - | 288 | WP_001270421.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECO55CA74_RS27320 () | 58750..59001 | - | 252 | WP_001132893.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| ECO55CA74_RS27325 () | 59390..60595 | + | 1206 | WP_000817637.1 | Plasmid partition protein A | VF |
| ECO55CA74_RS27330 () | 60592..61554 | + | 963 | WP_000756329.1 | ParB/RepB/Spo0J family partition protein | - |
| ECO55CA74_RS27335 () | 61695..62706 | - | 1012 | Protein_77 | DUF4113 domain-containing protein | - |
| ECO55CA74_RS27340 () | 62737..63153 | + | 417 | Protein_78 | DUF1281 domain-containing protein | - |
| ECO55CA74_RS30775 () | 63157..63462 | + | 306 | WP_032163448.1 | hypothetical protein | - |
| ECO55CA74_RS27350 () | 63539..64222 | + | 684 | WP_000085942.1 | DNA methylase | - |
| ECO55CA74_RS27355 () | 64223..64444 | + | 222 | WP_001104880.1 | hypothetical protein | - |
| ECO55CA74_RS27360 () | 64456..64890 | + | 435 | WP_000274489.1 | DUF1380 family protein | - |
| ECO55CA74_RS32075 () | 64936..65712 | + | 777 | Protein_83 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|