MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 130529 bp
Accession: NC_017619 Location: 809925..940453 Organism: Streptococcus suis SS12 Replicon: chromosome
Accession: NC_017619 Location: 809925..940453 Organism: Streptococcus suis SS12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU12_RS03950 () | 805720..806094 | + | 375 | WP_002934959.1 | DUF1149 family protein | - |
| SSU12_RS03955 () | 806096..806947 | + | 852 | WP_011922353.1 | DegV family protein | - |
| SSU12_RS03960 () | 806956..807723 | + | 768 | WP_011922354.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| SSU12_RS03965 () | 807720..808931 | + | 1212 | WP_011922355.1 | CCA tRNA nucleotidyltransferase | - |
| SSU12_RS03970 () | 808924..810792 | + | 1869 | WP_012775435.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| SSU12_RS03975 () | 810793..811128 | + | 336 | WP_002934966.1 | hypothetical protein | - |
| SSU12_RS03980 () | 811224..812183 | + | 960 | WP_012775086.1 | ROK family glucokinase | - |
| SSU12_RS03985 () | 812309..812587 | + | 279 | WP_012775087.1 | hypothetical protein | - |
| SSU12_RS03990 () | 812599..812901 | + | 303 | WP_012775088.1 | hypothetical protein | - |
| SSU12_RS03995 () | 812954..813793 | + | 840 | WP_011922359.1 | thymidylate synthase | - |
| SSU12_RS04000 () | 814079..814591 | + | 513 | WP_011922360.1 | dihydrofolate reductase | - |
| SSU12_RS04010 () | 814789..816015 | + | 1227 | WP_002934974.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| SSU12_RS04015 () | 816071..816658 | + | 588 | WP_012775089.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| SSU12_RS04020 () | 816681..817094 | + | 414 | WP_012028095.1 | nucleoside-diphosphate kinase | - |
| SSU12_RS04025 () | 817198..817869 | + | 672 | WP_011922364.1 | HIRAN domain-containing protein | - |
| SSU12_RS04030 () | 818151..819983 | + | 1833 | WP_002943192.1 | translation elongation factor 4 | - |
| SSU12_RS04035 () | 820033..820215 | - | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| SSU12_RS04040 () | 820350..821657 | + | 1308 | WP_012028097.1 | excalibur calcium-binding domain-containing protein | - |
| SSU12_RS04050 () | 822042..822623 | + | 582 | WP_012028098.1 | thymidine kinase | - |
| SSU12_RS04055 () | 822846..823925 | + | 1080 | WP_012775090.1 | peptide chain release factor 1 | - |
| SSU12_RS04060 () | 823925..824758 | + | 834 | WP_011922371.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| SSU12_RS04065 () | 824745..825353 | + | 609 | WP_011922372.1 | threonylcarbamoyl-AMP synthase | - |
| SSU12_RS04070 () | 825350..825781 | + | 432 | WP_011922373.1 | GNAT family N-acetyltransferase | - |
| SSU12_RS04075 () | 825805..827064 | + | 1260 | WP_011922374.1 | serine hydroxymethyltransferase | - |
| SSU12_RS04080 () | 827064..828038 | + | 975 | WP_002943200.1 | nucleoid-associated protein | - |
| SSU12_RS04085 () | 828039..828638 | + | 600 | WP_011922375.1 | lysozyme family protein | - |
| SSU12_RS04090 () | 828739..829497 | + | 759 | WP_002943202.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| SSU12_RS04095 () | 829514..830263 | + | 750 | WP_011922377.1 | translation initiation factor 1 | - |
| SSU12_RS04100 () | 830285..830638 | + | 354 | WP_002943204.1 | HIRAN domain-containing protein | - |
| SSU12_RS04105 () | 830659..831606 | - | 948 | WP_011922378.1 | hypothetical protein | - |
| SSU12_RS04110 () | 831634..832422 | - | 789 | WP_012775093.1 | hypothetical protein | - |
| SSU12_RS04115 () | 832618..834315 | + | 1698 | WP_012775094.1 | AAA family ATPase | - |
| SSU12_RS04120 () | 834312..835361 | + | 1050 | WP_011922381.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| SSU12_RS04125 () | 835567..836877 | - | 1311 | WP_011922382.1 | site-specific integrase | - |
| SSU12_RS04130 () | 836849..837082 | - | 234 | WP_011922383.1 | DUF3173 domain-containing protein | - |
| SSU12_RS04135 () | 837060..838298 | - | 1239 | WP_014636592.1 | replication initiation protein | - |
| SSU12_RS04140 () | 838808..839332 | - | 525 | WP_011922385.1 | hypothetical protein | - |
| SSU12_RS04145 () | 839360..839665 | - | 306 | WP_012775097.1 | hypothetical protein | - |
| SSU12_RS04150 () | 839918..841219 | + | 1302 | WP_012775098.1 | hypothetical protein | - |
| SSU12_RS04155 () | 841244..841450 | - | 207 | WP_012775099.1 | helix-turn-helix domain-containing protein | - |
| SSU12_RS04160 () | 841567..842544 | + | 978 | WP_011922387.1 | membrane protein | - |
| SSU12_RS04165 () | 842560..843399 | + | 840 | WP_011922388.1 | hypothetical protein | - |
| SSU12_RS04170 () | 843416..843820 | + | 405 | WP_012028114.1 | hypothetical protein | - |
| SSU12_RS04175 () | 843975..844997 | + | 1023 | WP_012775100.1 | hypothetical protein | - |
| SSU12_RS04180 () | 844987..846603 | + | 1617 | WP_011922392.1 | hypothetical protein | - |
| SSU12_RS04185 () | 846815..848365 | - | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| SSU12_RS04190 () | 848641..849339 | + | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| SSU12_RS04195 () | 849442..849774 | + | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| SSU12_RS04200 () | 849787..851325 | + | 1539 | WP_011922394.1 | signal recognition particle protein | - |
| SSU12_RS04205 () | 851519..852187 | + | 669 | WP_011922395.1 | SatD family protein | - |
| SSU12_RS04210 () | 852191..852931 | + | 741 | WP_011922396.1 | DUF3307 domain-containing protein | - |
| SSU12_RS04215 () | 852996..853433 | + | 438 | WP_011922397.1 | AAA family ATPase | - |
| SSU12_RS10625 () | 854084..854389 | + | 306 | WP_015445217.1 | Abi family protein | - |
| SSU12_RS10630 () | 854437..855045 | + | 609 | Protein_774 | Abi family protein | - |
| SSU12_RS04225 () | 855404..856474 | + | 1071 | WP_012775101.1 | tyrosine recombinase XerS | - |
| SSU12_RS04230 () | 856544..858052 | - | 1509 | WP_011922400.1 | phosphomannomutase/phosphoglucomutase | - |
| SSU12_RS04235 () | 858128..859069 | - | 942 | WP_012775102.1 | sensor histidine kinase | - |
| SSU12_RS04240 () | 859066..859731 | - | 666 | WP_012775103.1 | response regulator transcription factor | - |
| SSU12_RS04245 () | 859770..860027 | - | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SSU12_RS04250 () | 860011..860262 | - | 252 | WP_012775104.1 | hypothetical protein | Antitoxin Detail |
| SSU12_RS04255 () | 860354..862324 | - | 1971 | WP_014636593.1 | FtsX-like permease family protein | - |
| SSU12_RS04260 () | 862325..863077 | - | 753 | WP_011922409.1 | ABC transporter ATP-binding protein | - |
| SSU12_RS04265 () | 863213..863947 | - | 735 | WP_011922410.1 | ABC transporter permease | - |
| SSU12_RS04270 () | 863949..864695 | - | 747 | WP_011922411.1 | ABC transporter permease | - |
| SSU12_RS04275 () | 864697..865599 | - | 903 | WP_011922412.1 | ABC transporter ATP-binding protein | - |
| SSU12_RS04280 () | 865620..865997 | - | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| SSU12_RS11015 () | 866010..866150 | - | 141 | WP_012775106.1 | hypothetical protein | - |
| SSU12_RS04290 () | 866290..867456 | - | 1167 | WP_011922414.1 | carbamoyl phosphate synthase large subunit | - |
| SSU12_RS04295 () | 867474..868220 | - | 747 | WP_011922415.1 | esterase family protein | - |
| SSU12_RS04300 () | 868251..869078 | - | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| SSU12_RS04305 () | 869192..870196 | - | 1005 | WP_012775107.1 | winged helix DNA-binding domain-containing protein | - |
| SSU12_RS04310 () | 870261..871097 | - | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| SSU12_RS04315 () | 871174..872508 | - | 1335 | WP_011922419.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| SSU12_RS04320 () | 872704..873453 | - | 750 | WP_011922420.1 | HAD family hydrolase | - |
| SSU12_RS04325 () | 873636..874838 | - | 1203 | WP_014636594.1 | site-specific integrase | - |
| SSU12_RS04330 () | 874861..875088 | - | 228 | WP_001258320.1 | DUF3173 family protein | - |
| SSU12_RS04335 () | 875368..875592 | - | 225 | WP_014636595.1 | helix-turn-helix domain-containing protein | - |
| SSU12_RS04340 () | 875765..876512 | - | 748 | Protein_798 | rhamnulose-1-phosphate aldolase | - |
| SSU12_RS04345 () | 876525..877619 | - | 1095 | Protein_799 | L-rhamnose isomerase | - |
| SSU12_RS11020 () | 877605..877784 | - | 180 | Protein_800 | helix-turn-helix transcriptional regulator | - |
| SSU12_RS04355 () | 877888..878610 | - | 723 | WP_014636598.1 | hypothetical protein | - |
| SSU12_RS04360 () | 878621..879808 | - | 1188 | WP_014636599.1 | RtcB family protein | - |
| SSU12_RS04365 () | 879789..880535 | - | 747 | WP_014636600.1 | glycosyltransferase | - |
| SSU12_RS04370 () | 880507..881949 | - | 1443 | WP_014636601.1 | phosphoenolpyruvate synthase | - |
| SSU12_RS04375 () | 881946..882872 | - | 927 | WP_029752282.1 | hypothetical protein | - |
| SSU12_RS04380 () | 883061..883768 | - | 708 | WP_014636603.1 | ABC transporter permease | - |
| SSU12_RS04385 () | 883800..884531 | - | 732 | WP_024397630.1 | hypothetical protein | - |
| SSU12_RS04390 () | 884524..885444 | - | 921 | WP_014636604.1 | ABC transporter ATP-binding protein | - |
| SSU12_RS11025 () | 885500..885637 | - | 138 | WP_014636605.1 | hypothetical protein | - |
| SSU12_RS04395 () | 885787..886659 | - | 873 | WP_024397628.1 | helix-turn-helix transcriptional regulator | - |
| SSU12_RS04400 () | 886877..888742 | - | 1866 | WP_014636607.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SSU12_RS04405 () | 888729..889094 | - | 366 | WP_014636608.1 | MobC family plasmid mobilization relaxosome protein | - |
| SSU12_RS04410 () | 889107..889463 | - | 357 | WP_014636609.1 | hypothetical protein | - |
| SSU12_RS04415 () | 889785..892292 | - | 2508 | WP_014636610.1 | AAA family ATPase | - |
| SSU12_RS04420 () | 892328..893095 | - | 768 | WP_014636611.1 | zeta toxin family protein | Toxin Detail |
| SSU12_RS04425 () | 893095..893571 | - | 477 | WP_014636612.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SSU12_RS04430 () | 893641..893931 | - | 291 | WP_014636613.1 | hypothetical protein | - |
| SSU12_RS04435 () | 893981..894370 | - | 390 | WP_014636614.1 | hypothetical protein | - |
| SSU12_RS04440 () | 894367..894594 | - | 228 | WP_014636615.1 | hypothetical protein | - |
| SSU12_RS04445 () | 894648..895724 | - | 1077 | WP_014636616.1 | toprim domain-containing protein | - |
| SSU12_RS04450 () | 895764..896402 | - | 639 | WP_014636617.1 | hypothetical protein | - |
| SSU12_RS04455 () | 896498..896788 | - | 291 | WP_014636618.1 | hypothetical protein | - |
| SSU12_RS04460 () | 896802..897101 | - | 300 | WP_014636619.1 | hypothetical protein | - |
| SSU12_RS04465 () | 897172..898131 | - | 960 | Protein_824 | hypothetical protein | - |
| SSU12_RS04470 () | 898124..899818 | - | 1695 | WP_014636621.1 | recombinase family protein | - |
| SSU12_RS04475 () | 899858..900754 | + | 897 | WP_001809760.1 | ParA family protein | - |
| SSU12_RS04480 () | 900852..901061 | + | 210 | WP_000527317.1 | peptide-binding protein | - |
| SSU12_RS04485 () | 901078..901233 | + | 156 | Protein_828 | antitoxin | - |
| SSU12_RS04490 () | 901271..902008 | + | 738 | WP_002321849.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| SSU12_RS10635 () | 902154..902438 | + | 285 | WP_073459356.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| SSU12_RS10640 () | 902452..902628 | - | 177 | WP_002935078.1 | hypothetical protein | - |
| SSU12_RS04495 () | 902683..902946 | - | 264 | WP_000253176.1 | hypothetical protein | - |
| SSU12_RS04500 () | 902946..903176 | - | 231 | WP_001206986.1 | hypothetical protein | - |
| SSU12_RS04505 () | 903222..904076 | - | 855 | WP_000743700.1 | ParB/RepB/Spo0J family partition protein | - |
| SSU12_RS04510 () | 904085..905050 | - | 966 | WP_001820668.1 | plasmid recombination protein | - |
| SSU12_RS04515 () | 905575..906600 | - | 1026 | WP_014636623.1 | AAA family ATPase | - |
| SSU12_RS10910 () | 906755..907214 | - | 460 | Protein_837 | sigma-70 family RNA polymerase sigma factor | - |
| SSU12_RS04525 () | 907309..907821 | - | 513 | WP_000241709.1 | sigma-70 family RNA polymerase sigma factor | - |
| SSU12_RS10655 () | 908309..908482 | - | 174 | WP_002779755.1 | cysteine-rich KTR domain-containing protein | - |
| SSU12_RS04530 () | 908534..910453 | - | 1920 | WP_014636626.1 | tetracycline resistance ribosomal protection protein Tet(O) | - |
| SSU12_RS04535 () | 910844..911218 | - | 375 | WP_001129922.1 | TnpV protein | - |
| SSU12_RS04540 () | 911199..917147 | - | 5949 | WP_014636627.1 | DEAD/DEAH box helicase family protein | - |
| SSU12_RS04545 () | 917196..917747 | - | 552 | WP_014636628.1 | hypothetical protein | - |
| SSU12_RS04550 () | 917731..917922 | - | 192 | WP_014636629.1 | calcium-binding protein | - |
| SSU12_RS04555 () | 917923..922818 | - | 4896 | WP_014636630.1 | LPXTG cell wall anchor domain-containing protein | - |
| SSU12_RS04560 () | 923054..924064 | - | 1011 | WP_002936451.1 | Abi family protein | - |
| SSU12_RS04565 () | 924201..927002 | - | 2802 | WP_014636631.1 | CHAP domain-containing protein | - |
| SSU12_RS04570 () | 927004..929355 | - | 2352 | WP_014636632.1 | ATPase AAA | - |
| SSU12_RS04575 () | 929312..929665 | - | 354 | WP_014636633.1 | PrgI family protein | - |
| SSU12_RS04580 () | 929727..930581 | - | 855 | WP_014636634.1 | conjugal transfer protein TrbL | - |
| SSU12_RS04585 () | 930600..930842 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| SSU12_RS04590 () | 930860..932677 | - | 1818 | WP_014636635.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SSU12_RS04595 () | 932677..933165 | - | 489 | WP_002936460.1 | hypothetical protein | - |
| SSU12_RS04600 () | 933242..933826 | - | 585 | WP_014636636.1 | CPBP family intramembrane metalloprotease | - |
| SSU12_RS04605 () | 933829..934062 | - | 234 | WP_014636637.1 | hypothetical protein | - |
| SSU12_RS04610 () | 934071..934454 | - | 384 | WP_014636638.1 | hypothetical protein | - |
| SSU12_RS04615 () | 934465..934893 | - | 429 | WP_014636639.1 | hypothetical protein | - |
| SSU12_RS04620 () | 934877..936232 | - | 1356 | WP_014636640.1 | DNA (cytosine-5-)-methyltransferase | - |
| SSU12_RS04625 () | 936381..937184 | - | 804 | WP_014636641.1 | replication initiator protein A | - |
| SSU12_RS11030 () | 937181..937354 | - | 174 | WP_014636642.1 | hypothetical protein | - |
| SSU12_RS04635 () | 937554..937919 | - | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| SSU12_RS04640 () | 937985..938479 | - | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| SSU12_RS04645 () | 939056..941149 | - | 2094 | WP_012775128.1 | type I DNA topoisomerase | - |
| SSU12_RS04650 () | 941242..942084 | - | 843 | WP_012775129.1 | DNA-processing protein DprA | - |
| SSU12_RS04655 () | 942143..942700 | - | 558 | WP_011922479.1 | sugar O-acetyltransferase | - |
| SSU12_RS04660 () | 942711..942971 | - | 261 | WP_009909865.1 | metal-sensitive transcriptional regulator | - |
| SSU12_RS04665 () | 943078..943401 | + | 324 | WP_012775130.1 | rhodanese-like domain-containing protein | - |
| SSU12_RS04670 () | 943398..945056 | + | 1659 | WP_011922481.1 | FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|