MGE detailed information
MGE type: Prophage MGE length: 11417 bp
Accession: NC_017328 Location: 1628645..1640061 Organism: Shigella flexneri 2002017 Replicon: chromosome
Accession: NC_017328 Location: 1628645..1640061 Organism: Shigella flexneri 2002017 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFXV_RS26710 (1624183) | 1624183..1624350 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| SFXV_RS09015 (1624752) | 1624752..1625513 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| SFXV_RS09020 (1625581) | 1625581..1625784 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| SFXV_RS09025 (1626032) | 1626032..1628311 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| SFXV_RS09030 (1628645) | 1628645..1629394 | - | 750 | Protein_1658 | hypothetical protein | VF |
| SFXV_RS09040 (1629450) | 1629450..1630201 | + | 752 | WP_227804327.1 | IS1 family transposase IS1X2 | Transposase |
| SFXV_RS09045 (1630179) | 1630179..1631069 | + | 891 | Protein_1660 | IS3 family transposase IS600 | Transposase |
| SFXV_RS09050 (1631094) | 1631094..1631273 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| SFXV_RS31505 (1631423) | 1631423..1631584 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| SFXV_RS09055 (1631584) | 1631584..1631769 | - | 186 | Protein_1663 | DUF1737 domain-containing protein | - |
| SFXV_RS09060 (1632029) | 1632029..1632364 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| SFXV_RS30560 (1632645) | 1632645..1632753 | - | 109 | Protein_1665 | DUF3927 family protein | - |
| SFXV_RS09085 (1633674) | 1633674..1634495 | - | 822 | WP_000762882.1 | antitermination protein | - |
| SFXV_RS09090 (1634510) | 1634510..1634866 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SFXV_RS09095 (1634879) | 1634879..1635928 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| SFXV_RS09100 (1635930) | 1635930..1636208 | - | 279 | Protein_1669 | hypothetical protein | - |
| SFXV_RS09105 (1636275) | 1636275..1636526 | - | 252 | WP_000980987.1 | protein Rem | - |
| SFXV_RS09110 (1636744) | 1636744..1636899 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SFXV_RS09115 (1636971) | 1636971..1637258 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SFXV_RS09120 (1637258) | 1637258..1637497 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SFXV_RS27985 (1637522) | 1637522..1637827 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| SFXV_RS09125 (1637824) | 1637824..1638980 | - | 1157 | Protein_1675 | IS3 family transposase IS600 | Transposase |
| SFXV_RS09135 (1639042) | 1639042..1640061 | + | 1020 | Protein_1676 | MHS family MFS transporter YdfJ | - |
| SFXV_RS09140 (1640150) | 1640150..1641610 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| SFXV_RS09145 (1641646) | 1641646..1641849 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SFXV_RS09150 (1642027) | 1642027..1642713 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| SFXV_RS09155 (1642802) | 1642802..1643548 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.009 |